Gene detail

Detailed information of ENSOJPP00000033759.1 in Anthopleura xanthogrammica

Genomic Location: chr1:11085097...11089162
NR annotation: XP_031551260.1, protein LSM12 homolog A-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PBA2	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1
Q6NSN1	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1
Q6GP89	Protein LSM12 OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008416 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09793 all species →	AD	Anticodon-binding domain	Domain	Interproscan
PF21166 all species →	LSM12_LSM	LSM12, LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047574 all species →	Domain	AD domain	Interproscan
IPR039683 all species →	Family	Protein Lsm12-like	Interproscan
IPR019181 all species →	Domain	LSM12, anticodon-binding domain	Interproscan
IPR048478 all species →	Domain	LSM12, LSM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13542 all species →	LSM12 HOMOLOG	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSOJPP00000033759.1 in Anthopleura xanthogrammica.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23643	LSM12; protein LSM12	-	Circadian rhythm - fly	ko04711	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.