Gene detail

Detailed information of ENSOJPP00000034544.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031556701.1, DNA-directed RNA polymerase I subunit RPA2-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Sequence

CDS

ENSOJPT00000040003

ATGCAGGATCTTGTTCGTCCACACATCGATTCTTTCAATTTTATGTTGGAAGAGGGATTATCAATTGCTGTGCagGGAATACCACCCAGTGAGTTTATGACAGATGGAGGACAAAAAGTATCTATTTATTTCACTGATGCAAGTATAGGTGTGCCAACTATTTCAGACACCAATGTGCATTCATCTCAGATGAAAGTTTTCCCAACAGAGTGCCGTGAAAGTGGCTCAACTTATAAATCCAAGATTCAGGTGACAGCACAATGGAAGATAGATAATGAACCACAAGGAAGTGTTACAAAAGTTATAGCTTTTGTACCAATGATGGTCAAGTCCAATAATTGTTCCTTGGCCAGACTTTCTCCAAAGGAATTGGTACGGCAccatgaagaagaagaggaAGCTGGTGGATACTTTATTATCAAtggaattgaaaaaattataagaaTGTTAATTTTGCCCAGAAGAAATTATCCTCTGGCACTGGTAAGGTCTACTTGGAAAAACAGAGGTCCACTGTACACCGAGTATGGTATTCAGATGCGTTCAGTCAGAAAAGATGAAACTGCTGTTaATATGGTTCTGCACTATCTTTCTGATGGAAGTATAACTATGGCATTTggatttaaaaaagaattattttatgtTCCAATTGTATTTATCTTAAAGGCACTCATAAACACAACTGATCAACACATTTATAAAGATATGATCAGAGGAGAAGAAGACAATACTTTTCTGAAAGATTGTGTTGCAACAATGTTAAGAACTGCACAAGAGGAGGGAGCAACTAATCAAAGAAAGGTTTTAGAATACATAGGTGAGAGGTTCAGAGTCAAGATGAGACTCCCAGAATGGTATTCAGATGAAGCTGTTGCTCAATTTCTAATACAacaatgtatatGTGTCCATCTGGAAACCAACTTGGATAAATTCAACATGCTTATtTTCATGACAAGGAAGCTATATTCTTTGGCGTTGGGGAAATGTGCTCCAGAATCAGCCGACAGTCCTATGATGCAAGAGGTTCTTCTTGGTGGACATTTGTATCTCATGGTCTTGAAGGAGAGGTTGGAACAGTGGCTACAAATAGTTGCATTAAACCTCACCAAAGCATCAAAACTAAATCCCAGAGAATTTGTTGTGAATTCTGCTTCTGTATTATCTGCTTTTACTCAGTCAAGTAATGTTACTCACCAAATGGAATATCTAATGGCTACTGGCAATCTGATATCCAGATCTGGGCTTGCATTACTACAGGTTTCAGGTTTTACTGTGGTAGCAGATAGGCTAAACATGTTCCGTTTCATTTCCCATTTTCGCTGTGTACACAGAGGAGCTTTTTTCTCCCAGATGAGAACAACGGCTGTCAGAAAATTACTACCTGAGGCATGGGGTTTCCTGTGTCCAGTCCATACACCTGATGGTGCACCTTGTGGATTACTGAACCATCTTGCTGCAGCATGTGAGATCATTAATATACTGCCACCTGTAGCACATTTACATCGCTTGCTTTGCACCCTGGGGATGGTTCCTCATGATGCTCCCCTGCCGGGAGACCCTAAAGACTACTACCCTGTGGTGATGGATGGGCGTGTCCTCGGAAGTGTGGACAGGGACTTGGCACCATCCTTGGAAAACAGACTGAGAGTAATGAAGATCCTAGGACTAGAAAGGgTGCCGCCTCTGATTGAAATATGTCTTGTACCAAAGACAAACGTTGCCAGTCAGTATCCTGCTCTTTTCATCTATACGAAACCTGCAAGAATGATGAGACCAGTGATTCATCTTGCAACTGGAAAAGTTGAAATGATTGGTACCTTTGAGCAGGTTTACATGGATATTGCAATCATCAAGGATGAAATACATGAAGGGATTACCACACACTTGGAAATAAAGCAAACAGCAATGTTGAGTGCTATAGCAAGTATGACACCATTTTCTGACTTCAACCAAAGTCCAAGAAACATGTACCAATGTCAGATGGGTAAACAAACCATGGGTACTCCTGTACAAGCATTTCAACACAGAACtgataataaattatacaGAATACAGACTCCTCAAAGTCCTCTTGTTCGACCCACTACTCATGATGAATACTGCATGGATAATTACCCCCTTGGTACTAATGCTATAGTTGCTGTTATATCTTATACGGCTGTCTTCCAAATGATCCTCGTACAGAAGGAAGATTGGACTCAGATGGACTTCCACCAATAG

Transcript

ENSOJPT00000040003

GCCATGCAGGATCTTGTTCGTCCACACATCGATTCTTTCAATTTTATGTTGGAAGAGGGATTATCAATTGCTGTGCagGGAATACCACCCAGTGAGTTTATGACAGATGGAGGACAAAAAGTATCTATTTATTTCACTGATGCAAGTATAGGTGTGCCAACTATTTCAGACACCAATGTGCATTCATCTCAGATGAAAGTTTTCCCAACAGAGTGCCGTGAAAGTGGCTCAACTTATAAATCCAAGATTCAGGTGACAGCACAATGGAAGATAGATAATGAACCACAAGGAAGTGTTACAAAAGTTATAGCTTTTGTACCAATGATGGTCAAGTCCAATAATTGTTCCTTGGCCAGACTTTCTCCAAAGGAATTGGTACGGCAccatgaagaagaagaggaAGCTGGTGGATACTTTATTATCAAtggaattgaaaaaattataagaaTGTTAATTTTGCCCAGAAGAAATTATCCTCTGGCACTGGTAAGGTCTACTTGGAAAAACAGAGGTCCACTGTACACCGAGTATGGTATTCAGATGCGTTCAGTCAGAAAAGATGAAACTGCTGTTaATATGGTTCTGCACTATCTTTCTGATGGAAGTATAACTATGGCATTTggatttaaaaaagaattattttatgtTCCAATTGTATTTATCTTAAAGGCACTCATAAACACAACTGATCAACACATTTATAAAGATATGATCAGAGGAGAAGAAGACAATACTTTTCTGAAAGATTGTGTTGCAACAATGTTAAGAACTGCACAAGAGGAGGGAGCAACTAATCAAAGAAAGGTTTTAGAATACATAGGTGAGAGGTTCAGAGTCAAGATGAGACTCCCAGAATGGTATTCAGATGAAGCTGTTGCTCAATTTCTAATACAacaatgtatatGTGTCCATCTGGAAACCAACTTGGATAAATTCAACATGCTTATtTTCATGACAAGGAAGCTATATTCTTTGGCGTTGGGGAAATGTGCTCCAGAATCAGCCGACAGTCCTATGATGCAAGAGGTTCTTCTTGGTGGACATTTGTATCTCATGGTCTTGAAGGAGAGGTTGGAACAGTGGCTACAAATAGTTGCATTAAACCTCACCAAAGCATCAAAACTAAATCCCAGAGAATTTGTTGTGAATTCTGCTTCTGTATTATCTGCTTTTACTCAGTCAAGTAATGTTACTCACCAAATGGAATATCTAATGGCTACTGGCAATCTGATATCCAGATCTGGGCTTGCATTACTACAGGTTTCAGGTTTTACTGTGGTAGCAGATAGGCTAAACATGTTCCGTTTCATTTCCCATTTTCGCTGTGTACACAGAGGAGCTTTTTTCTCCCAGATGAGAACAACGGCTGTCAGAAAATTACTACCTGAGGCATGGGGTTTCCTGTGTCCAGTCCATACACCTGATGGTGCACCTTGTGGATTACTGAACCATCTTGCTGCAGCATGTGAGATCATTAATATACTGCCACCTGTAGCACATTTACATCGCTTGCTTTGCACCCTGGGGATGGTTCCTCATGATGCTCCCCTGCCGGGAGACCCTAAAGACTACTACCCTGTGGTGATGGATGGGCGTGTCCTCGGAAGTGTGGACAGGGACTTGGCACCATCCTTGGAAAACAGACTGAGAGTAATGAAGATCCTAGGACTAGAAAGGgTGCCGCCTCTGATTGAAATATGTCTTGTACCAAAGACAAACGTTGCCAGTCAGTATCCTGCTCTTTTCATCTATACGAAACCTGCAAGAATGATGAGACCAGTGATTCATCTTGCAACTGGAAAAGTTGAAATGATTGGTACCTTTGAGCAGGTTTACATGGATATTGCAATCATCAAGGATGAAATACATGAAGGGATTACCACACACTTGGAAATAAAGCAAACAGCAATGTTGAGTGCTATAGCAAGTATGACACCATTTTCTGACTTCAACCAAAGTCCAAGAAACATGTACCAATGTCAGATGGGTAAACAAACCATGGGTACTCCTGTACAAGCATTTCAACACAGAACtgataataaattatacaGAATACAGACTCCTCAAAGTCCTCTTGTTCGACCCACTACTCATGATGAATACTGCATGGATAATTACCCCCTTGGTACTAATGCTATAGTTGCTGTTATATCTTATACGGCTGTCTTCCAAATGATCCTCGTACAGAAGGAAGATTGGACTCAGATGGACTTCCACCAATAGGATCAAAACTAGAAAATGGAGACCCTTTCTACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H9Y6	DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2
B8JKD7	DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3 SV=1
Q5REE8	DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003279 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04561 all species →	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04565 all species →	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF04563 all species →	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF06883 all species →	RNA_pol_Rpa2_4	RNA polymerase I, Rpa2 specific domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR014724 all species →	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR007642 all species →	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR037034 all species →	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007645 all species →	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR007644 all species →	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR009674 all species →	Domain	DNA-directed RNA polymerase I subunit RPA2, domain 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000034544.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.