Genomic Location: chr4:15343140...15344613
NR annotation: XP_031556886.1, general transcription factor IIE subunit 1-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families
| CDS |
| ENSOJPT00000041103 |
| Transcript |
| ENSOJPT00000041103 |
| Protein |
| ENSOJPP00000035464.1 |
| UniProt accession | Description |
|---|---|
| Q9D0D5 | General transcription factor IIE subunit 1 OS=Mus musculus OX=10090 GN=Gtf2e1 PE=1 SV=1 |
| A6QLI8 | General transcription factor IIE subunit 1 OS=Bos taurus OX=9913 GN=GTF2E1 PE=2 SV=1 |
| Q5R8H5 | General transcription factor IIE subunit 1 OS=Pongo abelii OX=9601 GN=GTF2E1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008855 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11521 all species → | TFIIE-A_C | C-terminal general transcription factor TFIIE alpha | Family | Interproscan |
| PF02002 all species → | TFIIE_alpha | TFIIE alpha subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021600 all species → | Domain | Transcription factor TFIIE alpha subunit, C-terminal | Interproscan |
| IPR039997 all species → | Family | Transcription factor E | Interproscan |
| IPR002853 all species → | Domain | Transcription initiation factor IIE subunit alpha, N-terminal | Interproscan |
| IPR017919 all species → | Domain | Transcription factor TFE/TFIIEalpha HTH domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR024550 all species → | Domain | TFIIEalpha/SarR/Rpc3 HTH domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13097 all species → | TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0001113 all species → | Biological Process | transcription open complex formation at RNA polymerase II promoter | Interproscan |
| GO:0005673 all species → | Cellular Component | transcription factor TFIIE complex | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03136 | TFIIE1, GTF2E1, TFA1, tfe; transcription initiation factor TFIIE subunit alpha | - | Transcription machinery | ko03021 | deepkoala |
Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
