Gene detail

Detailed information of ENSOJPP00000036465.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031553607.1, DNA repair protein RAD51 homolog 4-like isoform X1 [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000042257

CAAGAAGGCCAACATTGTCCCATTGTTCAGCTAAAGACACGGGAGCAAAACTTTCAAGCTTAGCAACAACTGCATTCAAATCCATTCTATATGATCTGGATGCAAAATAAGTTCTACAGCCTTGGATCACTTTTGAATGTGGAAGAATAATTTTCCTCAAACGGGACGAACTCATATATAATATGAAAGTTATTTAGTATTTAGTCATTTGGCATGGCGTCAGTGATCAGGAAAAGATACAagtactgggttacctgtgtctCACACCACGTGATAACGCGCAGAGGTTTGGAAAAAACATGCATAAAGCTTTACAAGAGGCTTCTTCGTCTGTTCAAAAGCTTTTAGCTTCTTGTGACATCAAAACAGTAACATCTCTTATTTGTTGTGATTTGGAGAAAGTTCCTTATAAGTCAGTCCTAGAAAAGGAGGAAATCCAGTCAATGCAGAATGCTATTATTGGCCATTTCTCAAGTTTTCCTACTAGTGGCTGTGACCTACTTAATGATGTGGTGTCCACATTCTTCATACTCTCAACAGGTTGTGATCATTGGGATGAGTTATTGGATGGTGGTTTGTATTCTGGGGAAGTGACAGAAATTACTGGTTCTGCCGGCAGTGGTAAAACTCAGgtATGCATGAGTATAGCAGCTTCAGTTGCCATGAATATAGAGAAGAATGTTCTGTATATCGACACCCATGCAGCATTCAGCCCTGATAGGATCAAAGAGATGTTGTATTCAAGGGATTCCTCTTTAACTAGTCAGGATGTCACCAATATTTTGCTGAGGATTAAATGTATCCAGGcatttgatatatttgatgTAATCAATGGTTTAAATGATATTAAAGACAATCTTTATATGGAGGATCAAGGATTCTACAGTAACTTACGTTTAGTCATAGTGGATTCAGTATCATCTGTAATTACGCCAATCCTTGGTGGTCAGCAGACACAAGGACATTCATTGATGGGTCATCTGTCTAGGGATCTGAAGTCACTAGCTCTAGAGCATGGACTATCAGTCATGttaACTAATAACATCGTATCTGACACGTTTACTACACGAAAAGTAAAGCCCGCTCTTGGTCAAACCTGGTCTCATTTACCAAATACTAGAATATTTGTACAAAAAAGGGTTTCAGCAAAGACAAATGAGAGAATTGCAACAGTAATCAAATCATCTAGACAGGTAGGTGAACTGAATTcttgattatttcatattataCCAGAtaattcttactttttcttctattCACATTGTTACAGCCCACAGATATTTCAACGACATATTTTATACAGACTGGAGGATTACAAGACTTTCCTTGAGTCAGGCAGCGTCATAAGGtattaatagaccatttcacggttctcgtcgatcaacctcagcctagatagcgtgtaatttattctttagaatttgactaaagcccgtggaagttttaGGTGTGTCAAAAgatatctcgaaaatggtctattgtttgataatgtgtaattccttaaattaccgtgagctataatcaaattctaaagaatatattacacactatcgaggctgaggttgattgACGACAATCGTGAAATGGTTTATTAAATGCTAAAACCTGAGTAtaacataattataaaacatATATTGAAACCTCTGACCCTCATAAGAGGGCAGGGGATTAATGCGGCAAGACCGGggatttgaatttttgataaCGATACACTTTACTAAAATGCCTTATATATGATAAGTGAACATTGCTTGATCGTAAGAGATCACTAAAAGATCTAAATCAGAATCATGTTTACATTATGAACCGCTTAAAAATGAATAGTAATAGCAATGAGTGGGATCCATCTTATTGTTTATGAGTATAGAGTCGATTAACCAAGAAGATTGCTTCTTGATTACAAGAATGGGTTGTCGTCTTCATTGATCAGCATTTCGTTATCCTGACTGGACGGATTCAGATTGTATGTGTTGCTTCCAGGAAACTTCTTCTTCCTAAAAGTAAACAGTCAGGTGTGTAAACTCGATCTTTCCCTAATCCACGTTATGGCTGGGCAAGTGTTCACGTATTATTTTACATACCTTCGTATGAGATACACGACCACTAACGTCCCCAGAACGGAGAGAACTAAGGTCAAAATCACTGCAATCCCTATTTTCAGTGCGATGGACATATCACTTCGAGAGGCTTCTTTTGGTGAAGAAATGGAACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75771	DNA repair protein RAD51 homolog 4 OS=Homo sapiens OX=9606 GN=RAD51D PE=1 SV=1
Q2HJ51	DNA repair protein RAD51 homolog 4 OS=Bos taurus OX=9913 GN=RAD51D PE=2 SV=1
O55230	DNA repair protein RAD51 homolog 4 OS=Mus musculus OX=10090 GN=Rad51d PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08423 all species →	Rad51	Rad51	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016467 all species →	Family	DNA recombination and repair protein, RecA-like	Interproscan
IPR013632 all species →	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR047323 all species →	Domain	DNA repair protein RAD51 homolog 4, C-terminal	Interproscan
IPR051988 all species →	Family	Homologous Recombination Repair RAD51 Paralog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46457 all species →	DNA REPAIR PROTEIN RAD51 HOMOLOG 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005657 all species →	Cellular Component	replication fork	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0033063 all species →	Cellular Component	Rad51B-Rad51C-Rad51D-XRCC2 complex	Interproscan
GO:0042148 all species →	Biological Process	DNA strand invasion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10871	RAD51L3, RAD51D; RAD51-like protein 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.