Gene detail

Detailed information of ENSOJPP00000039238.1 in Anthopleura xanthogrammica

Genomic Location: chr4:16667954...16675265
NR annotation: XP_031566262.1, uncharacterized protein LOC116301362 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOJPT00000045437

ATGATCAAAAAGTCCCAACACAGTTTTATACTGGGTACGAGTTGTGCTTCAGCCAATAGTGTCATTTGTATCAAATACGTCAATACTACGTCATCAATTATGTGGAAATTCCACAACACTCATGAAAATACGGGAAACACTGAGTTACATTGTTGCTATGGAGTCATGATTGACATATTGCTGATGATACAAAAAGAGACTGGGTTTACGTTTGACCTATATATTGTCAGGGACGGCAAGTTTGGTTCTCTTGACAAAAGCACCAATCAAATGAACGGGATGATTGGTGACGTTGCTAGGGGTGAAGCAGACATGGCCTTAGCAACCGTTACTATCACCCACGAAAGATACAAATACGTTGATTTCACAACACCATATATGGGAACATCATTAGCATTCTTAGTTAAAAGAGAACGCATTAAGAAGTATCCCTTTTCTGAGTCCTTGAAGGACATGAGGCTCATGAAGCCGTTTAGTGTCTTGTTATGGCTCGCTTGTGTTGGAACATTCCTTACAGTCGCCACTGTTGTTTGGCTGTTTGATAAGATCAGCTTCTACCGCGACATTAAGTCTGaacattttcttccatttgaGTACATGGCGTATGTCTTTGGTAACATCTTCCATGTTCCCCTAACAATTATACAAGCCAAAACATTCGCGGTGCCTTTTCTGATGGTTTGCACCAACTTTGGCGCGTTGGTACTGATAAGTTCATATACAGCTAACTTACTAGTTTCTCTGATTGTTGTTGATGAAGTGTCTATAGTTAAAGGTGTGGAAGACAAAAAGctgCTCAACCCGCCAGATGACTTCACATTTGGAACAATAAAACATTCAAGTACTGAGGACTTTTTCCGGAATAGTGAAAACTCAAGATTGaggaaaatattcaagaaCATGGAAAAACATGgagtaaataatttttctgaaGGTATCGAGAAAGTTCGATCCGGGAAATTATCAGTGTTCATCGGGGAATCTGACGCCCTCCAGTACGAAATAGCTGAAGATCCCAGATGCAGTATTAAATTTGACGGGAAAAAACTGGAACTCTCTGGACTTGCATTCGCTCTGAGAaaaaactcggactggaatcAAGAGATTTCTAAAGCAATTCATAAACTAAATATGAAGGAAGAAATTGGCCAGGCATTTCAACGTTGGACGATACGTAGCTGTAACAAAGGCGAGAATAACATCGAGCCCTTCGGAATGGGTTTCGATGAGTTTGGAGGATTTTTATTTAACACTGCGCTaataaaaaaaacttttttgaagGAACTGAATTCCTTCTCAATCTTGACTGCCATTCAATATGGCTGCCGTCACGCGAACATGTTTCAAAACCTTTCTGATTTCCCCGAaacatttctcttttttctcttttctatttCTTCTCTCGGCAAAAATGTAACGTTATTCAGATTGCATAGGCCTGGGTTCCAGCACGTTGATCGGAGTGTTGCTTTGGAGTCCAACTTGCATCCGGGACTTTATCTGAGGTATAAGAACTACAAGTTTCGTATGGAAAAAGCAAAACCAACTGGTTTGTTCGaAAAAGATGCGACATTCCTTGAGCGTAATCCATTCGGTTCCAACAGCATCGCATTGGAACTATTTACCCATCCAGGATGGTTCGTGTGCCACGACACAAACAAGCCATTCGTGCTCAAAGCTGTATCAAAAGTCGTGCGCAGTAAAGAATTCGACCAGAAGTGTGTGTTTCGACAAAACATTCTTAAAGTTTACGGTCCGAAGCCGAACGAAGTAAGTAATCAAAgcaaagaggaagaagaagcaAAAGCAGCAGAAATCTTGGATACTTCAGTTGTAGTTCAACCGAACCAACAACTGAATAGTTACAATAACGCGGTTGCAAGGATGAGATATCTGAACAgcttaaaaacaaaaggtttcgCCCCGAAACCATTCTCACGGGGATCTCAGAATGTCTATACGGGATATAGGCCCCGGATACCGGGGAAACCGCTGCAAGGTAGTAGGTACGGGATATCGTATACTAATACTCCACATCGGTTAGCTCAGTATACACGCACACCAAGTTCACACTATGGAAATACGTGGTCAAGGGCGCGGCCTCCTGTCTATAAAGGACTAGATTTACAAGGAGGGCCTGGGTCCATGCGACCGGGAAAAGTTTTACATATGGCGCGAAAGCCTCAAACGCTTCTTGTTCAGACAGCGAATCAAGTCAATCGGTTACCTAAAGCGCCTTCCTACAATTTCATTAACGCCAATACACCACAACTATACAATACCAGGCCACAATATCGCCCAATCAGTGTTGTGAATCAAGTGACATCACCAAAggctcgaccaatcagcaacGCCAACAAAATGACGCCACCCAAAGTTAAAACAATCGTTTGGGGTGATCCAGTGAAGTCACAGACGTCTAAGCCAATCACTAAACCTGGTTCAACTGTACACAACAAATGCATCAGCATAAGATTCTTCAACAAGATTCAAAAACCAGTCAAGATCGTGTCCAGTATGAAGAGAGAAGGTTACCTCGTAACCGCAGAGACATTCAAACTCAGGACGATTTTTAAACACGCGCGAAAAGATCGAAAAGTTCATTTCTATGCACAAGACTTGAATGATAAAGAAGATGTGTTACTCAATAACAACAATGTAGTAACGGTTATCCCTGGCCCGTGCGACTTGCCTTATAGAAGCATATACCTCTCGAGAAATGGACAGTACACCaataaaaGCTTCTTGAAGTcagaggaagaaaaagaatctGGACTTATTCAAGGCAAAAGCATAGCAGTACGTCGTCCCAGTCCACAGGACGGATTCAGTCAGTGGTCAGAATTTGGGCCGTGTAGTACGACTTGTGGGACTGGGTTCCAGACGAGAAATCGTGTTTGTATGCCTGGTAAAGCATGCCTGGGTGCTACTAGGGAATCTAGAGCATGTATTCATGCTCCCTGTTCAGATAGTGAAAACCTGTGCAATAAgctagggaggggagggaaagTCAGTTGGAGTATGctagggagggagggaaagtCAGTTGGAGTATgctag

Transcript

ENSOJPT00000045437

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7XY94	Glutamate receptor ionotropic, NMDA 2B OS=Xenopus laevis OX=8355 GN=grin2b PE=1 SV=1
Q12879	Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens OX=9606 GN=GRIN2A PE=1 SV=1
P35436	Glutamate receptor ionotropic, NMDA 2A OS=Mus musculus OX=10090 GN=Grin2a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003327 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF05270 all species →	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR007934 all species →	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036195 all species →	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046373 all species →	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556 all species →	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000039238.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →