Gene detail

Detailed information of ENSPTBP00000001439.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: XP_020602206.1, uncharacterized protein LOC110041262 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSPTBT00000001439

CCGCCTGAAGTTATATACAAGGTGACAACTCGTCACGCTCTCCAGAGAAGcgaagaaaaatgtaaacaaacgtGACAGTTGCACTGCAGGGTGCGTGATCTTTGTACGCTATTCGATCCATATTTTTTACGCGATCTGTCCCAACGTGTTTTTAAACACAGACCAACACATGGTCCACATAAAAACGGGTCCTCCTTTCTCGCTGGTTTGCTTCATTTGTCCGATTTGTTGGTCCGTAACTTGCAGTTCGCCACTTTGCTAAACACGAAATCCCCAAGCTAGAGAGCCGCTAGGCAAAGATGGGCGTCAATCATCTTTGGAGTATTCTGGAACCAGTTAAGAGAAAGGAAAAACTCTCTACACTTAGCAACAAGACACTTTGTGTTGATTTAAGTGGCTGGATTTGTGAGGCACAGGGTGCAAAAAATCTCCAAGAAAATGTTGAGAAGCCCCACCTCAGAAATATCTTCTTCCGTCTGCTTCACTTGACGCGGCTTGGAGTAAAGTTGGTATTTGTCATGGATGGTAAACCACCTGAACTGAAATGGGAAGCGATTGCAAAGCGAAGTCCGTTAAAAAATAAGGGTTGGTCAGCTGGTACTGAAGTTGATCGATCACACTTTGAAGACTGGGTGAAAGAGtgtTGTACTTTATTAAACCTTCTGGGTGTGCCATGTATTGAAAGTAAAGGAGAAGCTGAAGCACTCTGTGCCTGGCTTGAAGCCAGTAAGAAGGTGGATGGCTGTATAACCAATGATGGAGATGTTTTCTTATATGGCGCTAGAAATGTGTACAAAGGTCTTAGTATCAGTAAGAAGGACGCATCAGTGGAATGTTACCAAATGGAGGAGATTGAGGATAAACTAAAGCTCAACAGGCAGAATATGGTTGCATTTGGAATCCTTCTTGGCTGTGATTACCATTCTAAAGGGGTGCCAGGAGTTGGAAAGAAAAAAGCCAtgaaacttcttgaaaatgtcAATCAAGACAATTTAATTGACAGGTTCAATAAATGGACAAAGGGGACAGACCAAGATGAAAAGATTTCAAAAGTGGAGAAATCTGTCAAAAGCAAAGCTCTGAAAGACAAGAATTTTCCACATCCGGAGGTTATTGAGGAATATTTGAATCCAAAAGTATTTGAAAAAGAAGTCTCTCTCGAGTTTACCCATCCAGATCTACAAGGTCTGCAGGAATTCTGTCGAACGAACTTACATTGGAATGAGGAGTACACCAGAGAAAAGGTTCTACCATCGATTACTTTTTGGCAAATGACCTCGTTGCAACAGGACGGAACCAAGATACTTGTTCAACCTGAAAGGATACTAAAAGCTCGAATCCAGCAGAGAGTTAAATGTTATGAAGTTCAGTGGAATAACATAGATCTTGGTGAAACATGTCTTTCGTCTTTTGTGACCACCGAGACCAGCGAGcTTTTTGCCAAAGTGTATCCTGAACGTGTTAAAGAATTTAATGACAGTGAAGCAGCAAAACTGTTTGAAAAGTCGAaaaagaagtcaaaaagaaagaaattacgGGAAGACGAATATGAAGAGGATTCAGACAGTATCGATGCTTGTCCTGATGGAAGTGCAAAGAGGGAGAGGAAGAAATCAAGGAGAGAGCTATTTAAGAAGTCAAAAACAGAAGTACACAAAGAAGtCATTGAAATAACAGATTCAGAAAGTCTTGACGCTAGTACTGATGAAAATGCTGAGACGAAGAAGAACTGGACGAAATTAAAGAAGAAGTCAAAAACAGAAGAACGCGGAGaggTAATTGAAATACCAGATTCGGATAGCCCTAACGCTAGTTCTGATGAAAATCCTGAGACGAAGAGGACGAAATCAAAGAGGAAAAAGTTAACAACAGAAGAACATGGCGAGGAACGTGTCGCCAATAGTCGCAGCAGACGATTACTcaaaaagaaggaaaagaaaaagaaaaaggcaacGGAAACGACAGGAAGACAAAGATCCATTACAGACTGGACTGAAAGCTAGTCCACTTCTTTTTAAATGAATAGAATGGATTATGGCTCCACTATCTGAACCCCGCCGTGAACGCCGTCTATAAACTGGGACCACCAGTTTACTGATCGTTGGGAGATGTGGCAGTTAATGTACTGGACAATGATATTGTTACCACTCTCAGACAAAACAGTGCCCCATACATTCACCTCTGTCACGTCGCGAACAAAAGCCCTGTGTTGCGTCGAAGCCTCCTCCAACATAGTCTTGGTCCTGTCCGGTGGAACTCCAGAGCTGATTTCGCCGCCCACATTTAACCTCAGTTTAATACAAACTGGATTGGAAGCTAGTTGATCGCTAGATTTCGAGTGGTTTCTCTTTTGCTCTAAAGCCCGCgagagcgagcgagcgagcgagcgagcgagcgcgATACACGAGCGGCTAAGCCACGAGCTGCGAGTAGCGCGGGTCGCGGCCTCGCCGCTCGTGTATCGCGCACGGTCCGCACTCGCTCGTTTTCGCGTTCGTGTCCACGGACGTAAGGCGCAGGATACCTCATCATTGGAAATCTGTCAGGTTGCGCAGttaccagtacccatttatattcCTGGGCCGGCTTGTTCAAAGCACGTTTGGAGGGGGATCAAAACTCttgaataaattgtttgcaaaagcaaaaaagcccaaataaattgtttccagatttaaaaaaaattctctgcaCGAAGATGCAGCCGGAAAAAAAGTGATTTGGGTAAAGTTTGATCaaaatatttcagttttttattgtttcagtgaggttttctgtttatattttctgtcctccattTTTGACGTCGACTGATCTCAAACTCTACAAGATATAAGCTCTAAAAgcacttttatacaagagaaattgaatcCTCGATCAACTTTTAGTCCTGGTTAGTGTACGTTAATCGGGTTTCGAAAATCATTGCTACTTCGGAAAACAAATTAACTGCAGCTTTATGCAGTGGTTATGTAATTGACCTTACCCAGCTGCAAAGCTCG

Protein

Uniprot

Uniprot term	Description
Q8BMI4	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2
Q17RS7	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2
Q9M2Z3	Single-strand DNA endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=SEND1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF18704	Chromo_2	Chromatin organization modifier domain 2	Domain	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR041012	Domain	Flap endonuclease GEN, chromatin organization modifier domain	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15338	GEN1, YEN1; holliday junction resolvase GEN1/YEN1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala