Gene detail

Detailed information of ENSPTBP00000002532.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: XP_027045081.1, TNF receptor-associated factor 4-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSPTBT00000002532

TCAGAAAATTGATCATAGCCTGGTACACAGGCTAAATTGATCAGTGTCTATAGCCAAGACGTCCTTCACTCCTTTTCGATTTCTTGATAGGCTTGGATGGCGATTAGCTAGCTTCTGGACAAAGCGCTCGTCTTCGACGATGGAGGACGAAAAAGAAGTTGACGGTGGCTATGATTTTGAGTTTGTGGACGAGTTGCCTCCATGCCAAAGTTGCTCCATTTGTTTTCTTGCCATGCGAAAGCCAGTGCAGACTAAATGTGGTCACCGCTTCTGCGAAACATGCTTGAAGAAGGCACTCAGGCGAGGCAACCATTGTCCGCAAGATAGAAATCATATTCCTAAAAGTGGAGGGTTTTTTCCTGATGTGGCCTGGGAGAGGGACATACTTTCGCTTCGCGTCAAGTGCAAGAGGAGTGAACGAGGATGTGATTGGACTGAGCAACTACGTAATTATAAGAAACACTTCAGGATGTGCCAATATGAAGATGTAGTTTGTGATGCCTGTGATGAAGTTGTGGAACGAAGGTTCTTGCAACAACATAAAACTGCAGAATGTCTCTGGAGGATTGTGCAGTGTGAATACTGTCAAAAGAAGTTTGCTTTCTTTCGCACAGAGACTCATCACAACAAATGCCCACGCTTTCCCCTTGATTGTCCTCAGCAATGTGGAGTGCAGGAAATACCGCGTGAGGAGGTGGAGACCCATGTTAAGAACGATTGTTTGTTGACGATGGTTACCTGTCCTTACGAGGAGGCAGGGTGCACCTTTCATGACAAAAGGAGTACTTTGAAAGCTCATCTAGAAGTCTCTACTGAGGACCACCTGAGAAAAACTTGGTCTAAGCTCCAAAATACAGCAAATACGTTGGAGGACGTAGAAGAGGACATAGTACAACTGGAAGAAGACAAAAAATCCTTAAAAAGGTCTCTGGAAAGGGAGCGTAGCGACAGGATGAAACTTGAAGTGAAAAACGGGACATTGAAGAAAGAAGTTAACAAACTGAAATATCAACTTGATGAGGTTAAACTCACCGCAGCTGAGAACCAAAAGTTTATCAGTTTAATGAAACCCCATGTTCTAGGACCAAAGGCAATTAGACAATCGATGAAGGTGGAAAAAGACCGTTGTCGCAATCCTGTGAAAGgcaaacagaaaagaaaatatcGGGACACTGATTCCAGtTCTTCACTGTCAGATTCTGATATTGAGAGGAAGCGGTTTTGTTCCCGTTCTACCACAAGTAGCTCAGATAGTTCAGACGAAGATACAGAGTGAGTTCAGCGCCATCATTGAAGTTCCGGTTCAATTTGCGATTTAATTAACAACTGAACTGAGCACTGCTTAGCtggaaatgttttttaaaattcggCCTTTTTAATGACAGCGTAGGACAGTCACGCACCACTACGTATTCGCTGAGTTTCCTACTAGATTGTTCATAACAACAGCTAAGCTAGCTAGGTTGATTTGACTAGACAAGCATAAACAATGCAAAGTTAAGTTACtttcttttgattttattattgtattttcCGTAGGTGTGGTTAAGGGAGTGTTCTGGGGGAATTGTTTTGTTGACTTAGGTCTTGTACGTAATTTGGTTATGTATAAAACAATCTTCTTCGATAGAGTTTCTTACGAAAGCCTTTCTCGGGGGCGCATTTCACTAGCCTTGGGTTCAGAAAGAGCATTTGCCTTTTCTGTGAAACTTAACGTTATTAGTTGCTGAGAAAAATATCTTCTGTGGTATGTGGTTCGTTAATTAATAAATGCGTTGCatttggaaaaagaaaactgttcCTTTCAGATTTGAGCTCCTTTTTTATCTGACATATGATGGGGCCGAAATGGGAACTTTTAATGACTGACATTGAAGGTTAATTTGCACGGCAGAATTTGTTTGGTACgagtacaaaaaaaaattgcactgATACCCAGTTTACACGTCCTTATTTACCGTGCTGAACTGCGTTAAATGATGTTTTGGTGCGAATAAAAGGCTCAACACCTTGGCCGGCGTACGGGATTCTGCCTTAGTGCTATTTCGCTATTTCATGTAAACGTAAAAAAACGTCTTATGCGAGTCGCGCATCTTTTCGACTTTCAGAAGACTAGAAAAGGGTGAAGGTATATGGTTCTTATTCTGACGGCAGCAGTGATGGCTTGAAACGCCCCTATTAA

Protein

Uniprot

Uniprot term	Description
Q6IWL4	TNF receptor-associated factor 6 OS=Danio rerio OX=7955 GN=traf6 PE=1 SV=2
Q54FD5	TNF receptor-associated factor family protein DDB_G0290931 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290931 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR012227	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan