Gene detail

Detailed information of ENSPTBP00000008076.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: PFX24054.1, Coatomer subunit delta [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSPTBT00000008316

ttattattattatttgcttCTATAGTATCGCGTCAGTTTGTAGAAATGACACGGTCACGCGTGGAGGGCCTTCTCGCTGCATTTCCTAAACTGATGAATACCGGGAAACAGCACACATTTGTTGAAACAGAAAGTGTTAGATATGTGTACCAGCCGCTTGAGAAACTCTACATGCTTCTCATTACAACTAAAGCCAGCAACATTTTAGAGGATTTGGAAACCTTGAGACTATTTTCTCGAGTGATTCCAGAATACTGCAAAGTAATGGAAGAATCCGAGGTAGTCGACAATGCCTTTTCACTGATCTTTGCTTTTGATGAGATTGTTGCTCTTGGCTATCGGGAAAATGTAAATCTCGCGCAAATAAGAACATTCACAGAGATGGACAGTCACGAGGAGAAGGTGTTCCGAGCTGTCAGACAGACACAAGAGCGTGAAGCCAAGGAAGAGatgaaaaagaaagcaaaagagTTACAAGCTGCCAGAACAGCCGCTGCAAAAGGCAAAGGTTTCAAAGGTTCAATGGGAGGCTTTGGAGGTTTTGGTGGTGGAGGAGGTCGTGATTCAAGTGTTCCTGTGGTTAATGATGTTACTGTGGTTGATCCTACACCTCCAAAACCATCATATCCcacaagAACTGGTGGCAGTGGAAAGGCAATGAAGTTAGGAAGTAAATCGAAGGATGTTGACAGTTTTGTTGACAAGCTGAGATCAGAGGGCACAGaggtAGTAAGCTCCAAGACAAAATTAACTTCGGTTGGAAAAACCACAACAACACCTTCAGTTCAAATGGGAAGTGTCCACGTGAAAGTTGACGAGAAGATAACATTGACAGCGGGAAGAGATGGAGGACTGCAGAACATGGAAATCAGAGGTCTTGTACTTCTAAGGGTGGCAGATGCTCAGTTTGGAAAAATACGGCTTAACTTGGAGAATAATGATGACAAAGGATTTCAAATGCAGACACATCCCAACATAGACAAAAAGTTATTCAGTCAAGAATCTGTAATAGGTCTCAAGCAGCCAAACAAACCATTTCCACTTAATTCTGACATTGGTGTACTGAAGTGGAGATTACAGAGCACAGACGAAGCACTAATGCCATTATCAATCAACTGCTGGCCTTCAGAAAATGATGGACAGTGTGACGTCAACATAGAATATGAACTTCTCCAAGAAAGTCTGGAGCTAAACGATGTCGTAATTTCAATTCCTGTCCCTTCCTTTAAAATGGATCTCTTTATAGTAGATCGGTACATGGGAGATGATGAAGACAAACCGAATAAGCTCAAGCTGGATGAAACCTCAAGACTTGCACAACTACAACGTGACATTGCggagcgaaaaagaaaaagagaattATTAGCCCAAGATAAAAATATCCCCATGTGTGAGAGCAACACAGAGGCTTTGGACTCTAAAAAGGTGAGATCCGATGTTCAAGAAGTGGTAAGCTTATCTAAGAAAgcgaagaagaaaaaaacaaaacgcgATGAGGAAAAAtcagagaagaaaaagaagaaaagatcTTCAAAGGAAGGCATGCCAGACGATGTTATGGAGCTTTCTGTTGATTCTGACCTCTCGAgggaaaagaaaAAGGACgcgaaaaaagacaaaaacaagagCGTTTCAAAAGAGAAAACTGATTTAAATGTTGATAATGAAAGAGTCAGTGAGTGTGAACAAGGTGACACTTCTCAAGAAAAACAAGATGCCCCAGAAGAAGTGCAAGAGGAAACAACAGAGGATAAGAATAAAGAGACAGGATTTACTGTTATTGGTGGTCAGAGAAAAGACAAGGAAGTAAAAAAAGTACAGAGAGTGTTACCCGACTGGCTTGCAAAACCCACTATTATTAACTCAGACTTCAGCAGTAATGTGATCCCAGTTGAAAAAATGCCTTACTTGGACACACATATAATCAGAAAACTGCAACAGCATGATATAAATCACTTATTTCCTGTGCAGAGTGTTGTAATCCCTGCCATACTGTCTCAGATGGAAACTAACAGTTGTTACGGCACTGGCGGTTATGATCCCAGTGATATCTGTGTGTCGGCTCCCACAGGAAGTGGCAAGACTCTTGCGTATGTGTTACCCATTATACAAAGCCTGCTAAGAAGGGTGGTATGTCACTTACGGGCCTTGATCATCCTTCCCACTAAAGATCTAGCAAATCAGGTCAAACAAGTTTTTGAGATGTTTACCGAGGGAACAAACTTAAGGGTGGGATTGGCATCTGGATCAAAGTCTTTTTCTAAAGATCAGGAGCAGCTTGTTAGTCCAAGCTCTTGCGGCAGCAGCAGTCGTGTCGATATTCTCATCTGTACTCCTGGGAGATTAGTTGATCACATCTCATCAACTCCAAACTTTACTCTCCATCACGTGAGGTTCCTTGTGATTGATGAAGCTGATCGTCTGTTGGATCAGTCTTATCATGGATGGCTTGGCAAAGTACTCAAGGCTGCCTATAACAAACAATCTACAAGTGGTTTTATCCAGAGTGACAGACCAGTCTCTTGCAGTCTTCAAACAATCAGGAGCCCCCCTGGTGTGCAGACCGCCGCTAATTTTGCCAAAATCCAGCTTCCCTTACAAAAGCTGTTGTTCTCAGCAACGATGACACACAGCCCTGAGAAACTTGCTCCTCTGCAACTGTACCAACCAATCCTGTTTACTGTAACAGGAAGTGTCAATCAAACAACAGATACTGGAGAGTCTGCTGCAGATGTGTCTATTGCTAATATCCCAGAAGGATTATCAGAATACATGACAGTTTGTAACAGTGGAGAGAAGCCTCTAATGGTGCTGTACTTTTTAACACAACTGAAGTTTCAGCGTGTTTTGTGTTTTGCATCTTCACTGGAAGCCACTCACAGGCTCTATCTACTCGTCAAGTTGTATGGTGGAGTACAAGTTGCAGAATATTCCTCAAGCTTGAACCCTCAGCAGAGAAAAGGAATCTTACGCGACTTTAAACTTGGCAAACTTCAGCTTCTGATCTGCTCAGATGCCATGGCGCGAGGAATGGACATACAGGATGTGTCTTACGTCATCAGCTATGACGTACCTAACTACGTCAGAAGCTATATTCACCGAGTGGGAAGGACAGCTAGAGCAGGAAACAAAGGAACCGCCATTACTCTTCTTCATAGCGACGAAGTACACCATTTTAAAGAGCTTATTCAGAAGACAGGCCGCGAAAAGATCGCTAAGTACAACATCAAAGAGGATAAACTGCAGTCGATGGTGGAAAGTTATCAAGACACACTTGAGCGACTTCAAGATGCTGTGAAGTTGGAAAGTCAAAAGAAAAGTCAACAAAGAGGAAAACACGATGTTATTAAGTTGTTACAAGAACAGTTAATGAGCAATTTGTTACAAAGAAACTCTGAAGAAAACGATTAG

Transcript

ENSPTBT00000008316

Protein

Uniprot

Uniprot term	Description
P53619	Coatomer subunit delta OS=Bos taurus OX=9913 GN=ARCN1 PE=1 SV=1
Q5XJY5	Coatomer subunit delta OS=Mus musculus OX=10090 GN=Arcn1 PE=1 SV=2
Q66H80	Coatomer subunit delta OS=Rattus norvegicus OX=10116 GN=Arcn1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027059	Family	Coatomer delta subunit	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10121	COATOMER SUBUNIT DELTA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan
GO:0051645	Biological Process	Golgi localization	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14807	DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala