Gene detail

Detailed information of ENSPTBP00000011480.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: KAJ7369806.1, Histone-lysine N-methyltransferase prdm9 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSPTBT00000011960

GAAGAGAGTGGCTCTAGCGCATTTGATGAACTTGGTAGATTGGGGGAAGAACTGGACTTCACTACAATAGAGAAAGATTCGATTTCTAGGAAGAAAGggacaaaaaatgaaaagaaaaagtcAACAGAGCTACGTATTCAGTACGCTACTCGAGGAAAAAAGCATTCTTACTGCGAGGCTGAAGTTCCTGATGACGACCACTACATCTGTAAGTTTATAGTCGATGAATGCAGCTTGCTTTTTGATCATTTTATAGCGCGCATCTCtgaattcaaattcaaattaaacGAACACTTTCGGATATACACTAAAAACATGGTTTGGTGGAATGGTTTGGCGTTTGGCGGATGGGTGAGTCCaacaaacatttatcaACCCGGTCAATTGAATTTCAGTAGAAAGGGAAACGAGTCACTATCAGGACACTCGCTCTCATCCAACAGAAAACCTGTACATGTAATTTCAGTTCTCTCTTGTAAAATGGTTTTGTTTGGGTCCTACATTTTGttggtaatttatttttatttttttgtatttctattgCGCGTGTTAGTCTGCGAAGAGTGTCAAGACCTTCACTATGGTGATTGTCCAGTACATGGGGAAATTCTAACTTGTCATCCGCAATGGCTCCACTTCCCACACACGGCCGAAATTCCAAAAGGAGTACGATTTGGTCCATATAAAGGAAAAAAGACAGGATGGCAGCACATAACAGATGAAACAAATACAAGTTACATGTGGGAGGTAATTATAAAAGATGGCAAGTTCAGTCATTTCATGGATGGTCGAGATGAGAGTCAGAGCAACTGGATGCGCTTTGTAAATTGCTCTCGTTGCGAGGACGAACAGAACTTGGTAGCCTATCAGTTTAGAGGCGAGATCTACTACCGAACGTACAAGTCTGTAAGTCCGGGAAAAGAATTACTGGTATGGTATGGAGAGAGTTACCTTTATGCTACGTCGACGCCTagtatgttaatttttttaacttaccCGAAAAGCGTAAAAAAAGCAATATCAGTTTACAATGTTGACATGAATAACTTGTTAAAGAAATTTGCTACTTATTTTTCAGGTAATGCCTACACATGCGAGGGATGTAAGAGAATGTACACTTCAATTAACTTTCTTCAAAGACATGAGAAGCGCTGTTCTTCCAGGACTTACAACTGGGAATGTGGAAAGTGCCATAAAAATTTCATGACAGTTAATCATCTTAACGTCCACATCCACCAGGATCACGCAGACGAAAAGCAATACCAGTGCACGCAATGTACTGAAGCGTTTAGTGACTCTAGGTCTCTGACCAAACACCTTCGTGGTCCCAGTGGAGAAAAGCAATACAAGTATACACAGTGCGACAAGGCATTTCACCAGGGAAGTCATCTGACAGAGCACCTCCGTActcacacaggtgaaaagccatATCAGTGTACTCAATGTAACAAGGCATTTACCACGCTTAGTGATCTGACCAGGCACCTCCGTActcacacaggtgaaaagccatATCAGTGCACTCAATGTAACAAGGCGTTTACCACGCTTAGTAATCTGACCACACACCTCCGTActcacacaggtgaaaagccatATCAGTGTACTCAATGTAACAAGGCATTTACCACGTTTAGTGATCTGACCAGGCACCTCCGTActcacacaggtgaaaagccatATCAGTGTACTCAATGTAACAAGGCGTTTAACATGCTTCATCATCTGACCAGGCACCTCCGTActcacacaggtgaaaagccGTATCAGTGTACTCAATGTAACAAGGCATTTAACCAGGAAAGTAATCTGACCAGGCACCTCCGTActcacacaggtgaaaagccatATCAGTGTACTCAATGTAACAAGGCGTTTAACCACCTTCCTCATCTGACCAGGCACCTCCGTActcacacaggtgaaaagccatATCAGTGTACTCATTGTAACAAGGCGTTTAACCGGgattttttgggcagcttttatgatttgtttttaaattttcctaTAAAGTTCTTTAGAGGAAATACAAGTAGTATTTTAATAAACTTATTGATTGACGTAATTGTGTCTCAACATGCACCTGCTGCAAATGACTGGAATTCCTTGCCATTGAATTTAATACTGAAGTAA

Transcript

ENSPTBT00000011960

Protein

Uniprot

Uniprot term	Description
P0C6Y7	Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1
Q96EQ9	Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus OX=10090 GN=Prdm9 PE=1 SV=2
Q9NQV7	Histone-lysine N-methyltransferase PRDM9 OS=Homo sapiens OX=9606 GN=PRDM9 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR050527	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036280	Homologous_superfamily	Multiheme cytochrome superfamily	Interproscan
IPR001214	Domain	SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan