Genomic Location: chr13:23786892...23788782
NR annotation: KAJ7352716.1, hypothetical protein OS493_034321 [Desmophyllum pertusum]
Species Oculina arbuscula · all data for this species · gene families
| CDS |
| ENSPTBT00000013509 |
| Transcript |
| ENSPTBT00000013509 |
| Protein |
| ENSPTBP00000012896.1 |
| UniProt accession | Description |
|---|---|
| P0ABQ3 | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=garR PE=3 SV=1 |
| P0ABQ2 | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) OX=83333 GN=garR PE=1 SV=1 |
| P77161 | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) OX=83333 GN=glxR PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010348 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14833 all species → | NAD_binding_11 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase | Domain | Interproscan |
| PF03446 all species → | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR013328 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase, domain 2 | Interproscan |
| IPR029154 all species → | Domain | 3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain | Interproscan |
| IPR006115 all species → | Domain | 6-phosphogluconate dehydrogenase, NADP-binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22981 all species → | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006574 all species → | Biological Process | valine catabolic process | Interproscan |
| GO:0008442 all species → | Molecular Function | 3-hydroxyisobutyrate dehydrogenase activity | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| GO:0050661 all species → | Molecular Function | NADP binding | Interproscan |
ENSPTBP00000012896.1.Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
