Gene detail

Detailed information of ENSPTBP00000020012.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: XP_020606053.1, pre-mRNA-processing factor 40 homolog A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSPTBT00000020847

atgGAGCACCTGACATCTACAACTgaCAATAAAGAAAATGGCGAAACAGATGGCAAAAAAACTGCCGAGGGAACAACTCAAGATTATCCCATGGCAAGTGCAGTGAATATAAGTGAGGCTCCAGCTGTTGCCACAGTGGAAAAGAAAGAGTATGTTTATGAAACAAAGGAGGAAGCTAAACAAGCTTTCAAGGAACTCCTCAGAGAAAAGGAGGTTCCATCTAATTCCACATGGGATAATGCCATGAGAATGATTGTTAATGATCCCAGATATGGAGCGTTAAAGAAGATGAATGAGAAGAAACAAGCATTCAATGAATACAAAACTAAAAGGGCTAATGAGGAAAAGGAGGAACAAAGAGCAAAGGCAAAACAGGCTCGAGAAGATTTGCGTAGCTTCCTGGAAAATCACAAGAAAATGCACTCATCAGTTCGGTGGCGTAGAGCTGGTGAAATGTTTCAGGGTGAACCTGTTTGGGAAGCTGTTCATGAAAGAGACAGGAAGGATGTGTTTGAGGATGTGGTGTTCTTCCTGGCAAAGAAGGAAAAGGAAGAGGAGAAAGAACAACGAACACACAACAGAAAGCTCATGTTAACAGTGTACAGTACCATGCCTGCTATTACTTACAGGACTACTTGGGTTGAGGCCTTGCAGATGCTTAAGGAGCACCCAACTTATAAAGATGACGAGGAAATCCGAGATTGTGAAAAAGAAGACATGTTGATATCATTTGAGGATCACATCAGAGCTCTGGAACAAGAGGAAGAAGAGGAGAAACAGAGGGAGAAGAACCGAGTTAAACGACAACAGAGAAAAAACAGGGAAGGATTCCTGGTATTGCTGGATGAGTTGCACAAGAGAGGCAAACTTCACTCAATGTCTCTGTGGGTTGACTTGTATCCAACCATCAGTAATGATGTGCGCTTCAAAAATATGCTGGGCCAACCTGGTTCAACTCCATTAGACCTTTTCAAGTTTTATGTGGAAGACCTAAAGGCTAGATTcagtgaagaaaagaaaataataaaagaaatattaaagGATCACGATTACACAGTTGATGTGAACACTGGCTTCAGCGAGTTTAATGACCTTGTGAAAGCAGATCACAGAAGTGACACATTGGACCCTGGGAACATTAAAATGACTTTCAACCATCTTATTGAAAAAGCTGAAGcaagagaaaaagaaagaatgaaAAAGGAGGAAAGAGAGcaaagaagaagagaaagtGCCTTTAAACAACTGCTAAAATCTTGTAGCCCAGCGATTGAAGAAAATTCAACTTGGGAAGAGGTGAGAGGAAGACTCGAAGAGGATCCTGCCTTTACAGCAGTCACAGTGGAATCTGAGCGAATAAGGATTTTCAATGAACATATCAGTTCACTTGAGGCGTGTACACACAATCATTCAAAATCACACAAGAAAGCCAAGAAAGCCAAGAAACACAGGAAAAGGTCGAGATCTCGGTCACCCAGTGGGGAATCTTCTCAATCTGATGAAGAGCACCCCAAAGAAAAGACATCGTCACACAAAAAGAAACGTCACAAGCGGTCACGCTCCAAGTCACCAGAGTCATCTGCCTCAGAATCAGAACCAGAAAAAGAAAGTAGTTcgacaaagaagaaaaaacacaaGAAGCCTTCTGAGGAATCTGAGGGGGAAAGATACAACAGAGAAAAGGAGGACAAGGAGAAAGACAGAGACCGGCGTGATCGAGACAAAGatcgagaaaaagaaaaggaagcaGACCGCAGCAGAGAAGGAGAGAAAGACAGGGAACGTGACAGGGAGAAAGAAAGGGACTACAGAGAGAAGGACCGAGACAAGGACAGGGACAGAGATAGAGACAGGGAAAAGGACCGGGACAAAGAGAGGGACAAAGATAGAGAACCTGAAAAAACGAAGGAGAAGTCCAAGAAATCTCAGGATAAGACCGGATGGGACACAACCTCGAGTGAGAGCGAAAGTGAATTGGAAAGCAGACGAAGAGCCCTGCTGAAACAACTTGGTGCTGCCGGAGAAGATCACTAA

Transcript

ENSPTBT00000020847

Protein

Uniprot

Uniprot term	Description
Q9R1C7	Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1
O75400	Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2
Q80W14	Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01846	FF	FF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036517	Homologous_superfamily	FF domain superfamily	Interproscan
IPR002713	Domain	FF domain	Interproscan
IPR039726	Family	Pre-mRNA-processing factor Prp40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11864	PRE-MRNA-PROCESSING PROTEIN PRP40	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12821	PRPF40, PRP40; pre-mRNA-processing factor 40	-	Spliceosome	ko03041	deepkoala