Genomic Location: chr2:42077649...42086152
NR annotation: KAJ7370364.1, CDK2-associated and cullin domain-containing protein 1 [Desmophyllum pertusum]
Species Oculina arbuscula · all data for this species · gene families
| CDS |
| ENSPTBT00000020996 |
| Transcript |
| ENSPTBT00000020996 |
| Protein |
| ENSPTBP00000020149.1 |
| UniProt accession | Description |
|---|---|
| Q8R0X2 | CDK2-associated and cullin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cacul1 PE=2 SV=1 |
| Q86Y37 | CDK2-associated and cullin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CACUL1 PE=1 SV=1 |
| Q5XI53 | CDK2-associated and cullin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Cacul1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008679 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 adaptor Cullin RING|Cullin · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00888 all species → | Cullin | Cullin family | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042652 all species → | Family | CDK2-associated and cullin domain-containing protein 1 | Interproscan |
| IPR001373 all species → | Domain | Cullin, N-terminal | Interproscan |
| IPR016159 all species → | Homologous_superfamily | Cullin repeat-like-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46636 all species → | CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000082 all species → | Biological Process | G1/S transition of mitotic cell cycle | Interproscan |
| GO:0019901 all species → | Molecular Function | protein kinase binding | Interproscan |
| GO:0045860 all species → | Biological Process | positive regulation of protein kinase activity | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
ENSPTBP00000020149.1.Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
