Gene detail

Detailed information of ENSPTBP00000022563.1 in Oculina arbuscula

Genomic Location: :...
NR annotation: XP_020615133.1, DNA-directed RNA polymerase III subunit RPC3-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSPTBT00000023546

AATATGGCGACGACCATGTCTCATCTGGCGGGAAGAGTTTTCTAGTTTCGATCCGTAATGTCAGTTCAACAAAAGCGAGTCGCGTCTCTCATTTTAAAAGAACACTATGGAGAAATTGTAGAAAAAGTTGGCACTTACTGTATTGGAAAAGGACCTCGTCCTTTGCGGGATATTATTGGAGACACTAAGCTTCCTCGAGATCAAGTGCAGAAGGCATTATGCTGTCTTATTCAACATCATTTTGTTACATTTGAAGTGAAAAAGAAGAACGTGACATTGTACAATGCCTGGATTTCCAATATACTTCTTCGCCCCCGTGCTCCGCGTTATATTTACTGCGCAAAGACATTGTTTGGGTATACAGGAGAACTGATCATTGATGAGATTTTTCAACATGGGGCAGTGGCTATGAGCGCCCTGGTGGAAAAAGTTTTGAGCCATTTAGAAGAAGATAACCTTGATGTGGATGAATATGAAGTTAAAGCGACCTTTGCCGATCTTGTAAAGAACCATTTCCTCCAAAGAGTGAAGCCAGTTCATAATAATGAAGACAATGCGGATATGAACAGTTACAATGATGACATGTATGCTTTGCCTCCAGGAGTGACTTTACAAGGTCATGGTGCAAAACGAAAAAGAAGTATTGATGATCAGGGCCAAATaccaaaaagacaaaaaacagGAACAAGtcAATCTGTCAGTGGTAGAAGCTCTGAAATAAATGATGAAGGGATTTTATGGCAAGTGAATTTTTCCAGGTTTCATCAGCATTTCATTGATGAGGATATTGTCTCAGCTGTAACCAAGAAAGTCGACAAGTTTGCTGGAGAGATTGTAAAGACAATGTTAAAGTCAAGTGAGCTAGAAAGAGATCCTTTATCACCAACATCACAGACAGTGTCACTGTATGAGATCTCACAAAATTTGCCAATTACTCCCAAAATGGAGAAGGCACAGATCACCCAGTACCTGTCACTACTAACAGATGAGAAGGAAAGTTTGGTTTCCAAAACAGGGGAGAGTGGTGGTGGAATGTACTGTATAAATATGCAAAAGTGTGTGGATATGCTTTGTCAAAATGTAATAGAATCTATAGTTCAAGAAagGTTTGGTTCAAGATGTTTTAGAATCTTCAGATTGTTGTTGCTCAAGAAACACATGGAACAGAAACAGATAGGTGAGCTTGCAATGATTCCATCTAAGGATGCCAAAGAGCTCTTGTACAAACTGTTTGCTGAGAAGTTTATTGCATTACAGGAAATCCCTCGTGCTTCAGACTATGCACCATCCAGAACATTTTACCTATTTTCTGTGGATCTGCCACAGCTTAGTAGAATGTTGATTGAAAAGTCATACCAGGCCCTTGGAAACCTGATGAGCAGACGACAGACTGAAGTTCAGGAACACAGACGTCTTGTGGAAAAGGAAGAGAGATTGGAGGCCACAATAAACTCACTGAAGGCACAACACGGTGAGGAGACATCAGCAGAAGCTGTAGCTGAGCTTCAGGAGCTGATTATACCAGCAGAGAGAGAACAACTCAGGAAACTGAAACTAACTCTTGCAAAGTTGGAACAGAGTGAGTTGCAAGTTGATGAGACTATTTTCAATCTATCACAGTACATTGCTTCACATTAAAAAATCAAGGCCACCTGTATTTGGTAGATAATCACATGACACACACAGTCACATTTAATAACAGATTTTGTTGGCTAAATTTGTGGTGTTTTGGCATGTGAAAGTTTTAATGTAAAAGGTCAGTGGGAGTTACACTGAAAGATGACACCAACAAGATGTCACCTGAGAGAACCTGAATTGATCTTGATGCTACACGATATGGAGCAATTCAAAGAACATTATTTAGCTTCATTTTTAGAAGGAAGCTCCACGATTCCCTCAGGATGCAAACTTTTTTCTGCAGTCTTGTTTTCCCAATTTAAAGCCATTAAATGGAGATAACCAGGCATATTCAAATCTAGGAGGCTGAAGCCCAGTTTAAAGCAGAGCAATCAAAAGAGGTTGATTTGGACACTAATTAAATCTATATTTATTATAGACTTAGaacagaaattctgaaaactgCTATCAAAACTCCTAGTCAAGAGTGGTAAAACTGCCGTTAGAAACTTGAATTccacaaaacaatattttttacagAATTTGTATAACAAATAATGATGCTATCGAGCCAACAGGGTCAAAAAACTCATGAGGTGAAAAGAAAAGCAGGTTTTTGTTTAGGTCTAAAGGGCACCAAGCTGTTTTACAGCAGAAAGTATGTTGGCTTTCCTGATTTCCACATGATAAAACTTGTTAATTGACGCAGAGCCAgatgaaattttgaaaaagcatTTTACCACTCTAGTAGTAGGTATTGACAGTTACTGATACATTGATGTGCAACATTGTACTTTTAGAAAACACCTTGTAAGTGCTTCTACAGACCACTAAATGTGATATTAAAACACAGtacaaagaacaaaaacaatgaaGAGTCTGTTAACTTTTATTATAATGTTTTGCATTGTAATTCACTCTCAAGGAAAATAAGTGACAACCATTTAATTGTCATATAAGGAATGCAAGATAGATATGTTCATCACACAGCATACATAACTTACAGCAAAAGAGAATATT

Protein

Uniprot

Uniprot term	Description
Q2TBL4	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1
Q9BUI4	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1
Q5XIL3	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20912	RPC3_helical	DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain	Domain	Interproscan
PF05645	RNA_pol_Rpc82	RNA polymerase III subunit RPC82	Family	Interproscan
PF08221	HTH_9	RNA polymerase III subunit RPC82 helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR008806	Domain	RNA polymerase III Rpc82, C -terminal	Interproscan
IPR039748	Family	DNA-directed RNA polymerase III subunit RPC3	Interproscan
IPR013197	Domain	RNA polymerase III subunit RPC82-related, helix-turn-helix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03023	RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3	-	Transcription machinery	ko03021	deepkoala