Gene detail

Detailed information of ENSPTBP00000023652.1 in Oculina arbuscula

Genomic Location: chr3:28710809...28724400
NR annotation: KAJ7385326.1, hypothetical protein OS493_016402 [Desmophyllum pertusum]
Species Oculina arbuscula · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPTBT00000024669

ATGATTACAACAGCGACGCAAGAGGTAGCCGTGACTATTACTCCTCGAAACAGAGCCAACTTTCGAAGGCTCAAAACTAACAGCATACAAAGTGTGAAGCGatgggaaaaagaaaacgagCTTCTTTACGCCATGATGGAGGACGAGAGCGAATGGTTAGCCAAGTTATTTCCCGACGTGGTTATCTCTCCGGAGTTTTTCTTCTACGCTTTGGAAGATGGCTCGTTACTCTGTCGACTTGCGAACTACATTCAAGAGAAAGCGGAGAAGTACTCTCGGGAGCAAAACGTACCGGTGCCTGGAAAGAAATTTCGCTATCACACAATGAGCAAGTGCGGCAGAGAGATCAAACTTTTTCGGTCCCGGGAGAATGTGCAACAATTTCTCACATGGTGTCGAAGTCACGGTATTCCCGAAGCCATTCTGTTCGAATCGAACGATGTTGTGGAAGTTGATGATTACCGAGAGGGTTGCAGAGGTGTCATTATTTGTCTAATGGAGATTGTCAGAAAGACATCGAAGTTTGATCTAGACGAGCTGCCGCAATTAATTCAAATGGAGAAAGAAATCGAGGAGGACGAAGCGCTGGGCGACACGGAACCGAACGAGCAAGGGCAAATTCTGGATGTGGAGAAAATAAACATGACTGAAATTGACAACCTTGAAGTGCAACAAACAGATCAGCCAGAAATTCAAAGCCCTAGCTCGCTGGACTCGGATTCTGGGGTCGACTCTGTGTTTGATCAAGAGGAAGGGGAAAATTCGGCTGCCCGTCTTACGGAATTTTCTGTGGAAGAAGCCGAAGATATAAAGAAAACCACAGTCGTGCCAAGAAAACAAACTCCGTCGAAACCAAAAGATCAAAAAAGTTCTCCAAAGAGTCGGCCTAAAACAAAAGAACTTCCTTCTCTACTGGACAGCACTGGGCCAAAATCTGAATTAGATAAACAGGTGTGCAAGATTGCCCAAGACTATAACATAAAAATTGTCCATCGTCTGAAAGAAGGGAAGTACATCATTCTTGGCCGAGTCATGTTTGTTCGGATGTTGAATGACCACATGTTGGTACGTATTGGTGGAGGATGGGATACATTGGAACATTACATAATGACTCATGTACCCTCTAAGCAAGACTCGCCAGTTTATTCCTCGCAAGGAAGCTTGAGCCAGCTATCTGCAACTCAATCCTCGCCTAAGAAAAAGTTATCAGTAGTTGAAAGCGACGAGAAGGACATCACAGACGCAATCCGTAAAATATCGTCTTCGGTGTCAGAGAATTTAGCCACAAGACCCGCCAGCTTCACTAGCAAGGCTTTTCACCAGCTTAAAAGTCGTTTCGACAAGGGGATTTTCGGGACGAGTAGGCGAACCTCATCTCCTGATCTCACGTTGAAAGGCAAGAAAATTTCGAGGCGTTTGAGTGATACTTGTACTATGGCTGACATTGCTTCATCTCTTGCATTTGACGGAGCAGCGAGCGAAGAACAAAAGCAAGCTGCAAATGCAAATAACAATGATTCCGAATCAAAACAACCCGAGTCTGGGGAAACTGAAGACGCGGTAGTGGGAAAGGTAACGGCGCCAACTGAAGACTTACTAGGAGACAAAACTTTGCAGAAACCCGTAACTTCGGACGAGATTGACGGTCAGTCTGTACCCAGTGGAGATTTACCCACCACGGATCACGCAAATGGCTCTAATTTGCCTGGGGATTTGTTAGGTGGTGCAGTGAATGGTACCGAAATTTACCAAGCTGTGCCTCGTGAGGAGAATCTTGTCGATATTTCGTCGTTTGATCCTTTTGCTGCACCGTCTGACCAGGGCGAACTTATTTCGATCGACAGTGCACCTTCGGAGAAAATCGATGAGCAGCCGAAGATCACGGATCACGGGTTTGAACAATTTACAACTGAGTCTGAAGAAACTGAGGTAGTTTCAACGCCTCGGATTGACCTGGGAGATCTACTAGCGGACTCAGAACCGGCAGAAACTAAGACACAAGAAAATATGGTGGAGTCTTCACCGCCGGTTACTCTTGAAGAGTTACCAACGGAAAAAGAATCAAGCGAGGTTACAGAAACCCAAGCAGAAGGGAATTTGATCGAGTCTTCACCTGCGACTGTAGAAGAACACGCAACACCGGAAGTACAGTCGGCAGAAGAAGTCAAGCCTGGCGAACCTGTTATGAATGAGAACGTCCAAGACGTTCCTACCATTGCAGTAGATCCCGTTGTGGAAGAACCCGTTCCCAGCGAGGAAGCTGTGAAGTCTGAAGGAGAAAGTACTGAAGCTGCTCCTGTGTCGGACGAGACTAGCACGCAGGAACAGAGCCAGGAAGAAATTGTCGAGAGCGTTCCAGTGAAGGTGGACGAAGAGTCCAAGCCTGTCGAGGAAGAAGCTAAACCTGTCGAGGAAGAACCCAAGCCTGCAGAGGAGGAAGTTAAGCCTATAGAGCCAGAAGCTAAGCACGTAGAGGAAGGACCCAAACCTGTGGAGGACGAAGCCAAACCTGTGGAACCAGTAGCCAAGCCTGTAGAGGAAAAAATTAAGCCGGCAGAGGCAGAAGTTAAGCCTTCAAAGGGACAGGCTCCTAAAACAGGGAAACCTGCTGAAAAGGTCACAAAAACAAAGCCTCACACAGCTGGTGCAAGACCTAAGTCTCCTCCTAAAGCAGCCCCGGCAGCAAAAACAACGGCAGCTAAAAAGCCAACAGGACCTGCAAGGACGACTTCACCTACAAAGGCGCCAACCTCTGCGGCGACGAAAAAAGACGTCAAAGCTCCAGCAACCAAAACACCTGCTGCTAAAACACCAGCTACCAAGCCTGCTGCTCCTAAAGTGCCAGCCACCAAGACAACAACCTCAGCGGCTCCTAGTGCTAAGAAACCCGCTACTAAACCTGCAGCTACGAAGATAGACGAAGCAAAGAAACCAGAGAAGCCTAAGAGTGCCGCAACAACTCGCCCTccgacgaaaaccgcgggcacCAGTGCCACCGGTGCGGCTCGACCAGCTAGTGCGGCACCCAAGAAGCCTCCGGCCTCTACCTCGAGACCAGCTGCCGCTAAGGTCCTTGGTAAAGCGATGAAGGACGCTGGTCCTCCAAAAAGCGCACCAAAGACGACAGCTTCGAAACCAGCATCCGCCAAACCAACGCCTTTGAGAACAAGCGCCCCTGCAACAAAGCCTGCTGCACCTAAACCAAGCCGAACTCAGAGTGCAAAGCCCAGTGACAAAACAGATGGTGCAGCTAAGCAACCTACTTCACGGCCGCTAAGTGCGAAGCCAAAACCGACGGCTACAACAACGACCGTAAAAAAGACAACAACGACCGTTACCACTAAGACTGGTGCCGGCCCTGCAAGGACCACTACCACGAAAACGGTGACACAAGCTAAGACCGGTCAAGGGAAAACTACTTCAACAACCACTAAGAAAGAAACGACAAGGCCTGCCTCGGCTGCTAAAACTACTACTGGTGCCAAGCCCGCGGTCACTGGTCCCAAATCGGCAAAACCTGGCGCGAAACCGTCCACGAAAGCATCGCCTAAGAAAAAGGTGGAAGAGCCTGCAAAAGGAAAGGAGGAGGTCAAACAGGACGAGAAACCAGCATCTCAACCGGAGAAGGTCGACGAACCCGCGGCACCTGTGATCAACGAGAAGCCTGCTGAAGTTGCCGAGATTGCGCCTGAAGAAAAGCCTGCCGAAGCTGTCGAAGTGGTTTCAGAAGAACGTCCGGTCGAAGCAAGCCCCGAAGAGAAATTGATCGAATTAACGCCCGAATCAGGTCCAGCCGAACAAGCTGCCGAACCAGGCGAAGTCCCTCCGGAAGGCGTTAAACAATCAAATGTCGTCACAAAGATCGTCACGAGCGAAACAACGACTATCATCGCGGATGGCGAGGAACAATCGACTACCACAACAGAAGAAACTACTTTTGAACAGACGATGGGAGAAAGCTAA

Transcript

ENSPTBT00000024669

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W3Y4	GAS2-like protein pickled eggs OS=Drosophila melanogaster OX=7227 GN=pigs PE=2 SV=2
O43903	Growth arrest-specific protein 2 OS=Homo sapiens OX=9606 GN=GAS2 PE=1 SV=1
P11862	Growth arrest-specific protein 2 OS=Mus musculus OX=10090 GN=Gas2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001095 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF02187 all species →	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036534 all species →	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR003108 all species →	Domain	GAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756 all species →	TRANSGELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001578 all species →	Biological Process	microtubule bundle formation	Interproscan
GO:0001725 all species →	Cellular Component	stress fiber	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008093 all species →	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051764 all species →	Biological Process	actin crosslink formation	Interproscan
GO:1904825 all species →	Biological Process	protein localization to microtubule plus-end	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPTBP00000023652.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →