Genomic Location: chr5:31517390...31523433
NR annotation: XP_020601229.1, dimethyladenosine transferase 1, mitochondrial-like isoform X1 [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families
| CDS |
| ENSPTBT00000028957 |
| Transcript |
| ENSPTBT00000028957 |
| Protein |
| ENSPTBP00000027682.1 |
| UniProt accession | Description |
|---|---|
| Q28HM1 | Dimethyladenosine transferase 1, mitochondrial OS=Xenopus tropicalis OX=8364 GN=tfb1m PE=2 SV=1 |
| Q2TBQ0 | Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus OX=9913 GN=TFB1M PE=2 SV=2 |
| Q8JZM0 | Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Tfb1m PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004469 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00398 all species → | RrnaAD | Ribosomal RNA adenine dimethylase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001737 all species → | Family | Ribosomal RNA adenine methyltransferase KsgA/Erm | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR011530 all species → | Family | Ribosomal RNA adenine dimethylase | Interproscan |
| IPR020598 all species → | Domain | Ribosomal RNA adenine methylase transferase, N-terminal | Interproscan |
| IPR023165 all species → | Homologous_superfamily | rRNA adenine dimethylase-like, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11727 all species → | DIMETHYLADENOSINE TRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000179 all species → | Molecular Function | rRNA (adenine-N6,N6-)-dimethyltransferase activity | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0006391 all species → | Biological Process | transcription initiation at mitochondrial promoter | Interproscan |
| GO:0031167 all species → | Biological Process | rRNA methylation | Interproscan |
| GO:0034246 all species → | Molecular Function | mitochondrial transcription factor activity | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0000154 all species → | Biological Process | rRNA modification | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15266 | TFB1M; dimethyladenosine transferase 1, mitochondrial | EC:2.1.1.- | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
