Gene detail

Detailed information of ENSPTBP00000027963.1 in Oculina arbuscula

Genomic Location: chr5:31834568...31844911
NR annotation: XP_020601198.1, uncharacterized protein LOC110040322 [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPTBT00000029252

ATGAAGGCATCCTCAAGTATTTCTTTTCTAATTCACTCGTTTCCAATATCTGAAGAAGAGAGTGATCTTCACAGGATTCCTGTTCTTCCCTGTGGTTTAGATGAGTGTGggttgaaagaaaacaaaacttactTGGTAGCAGGTGGGGTTCGAGGATTTGGATTTGAAGTGGCCTGCTGGATGGCCGAGAATGGAGCAAAGTCGATAGGACTTATTAGTCGTTCCAAACCTTCGGATTCAAAACGTCGAGAAATACAAGGAATAGAGAAAAGGACGGGGACAAAGATCCACACGTTTCAGATTGACATTTCCAACCAAGAACAGATGTTGTATTTTAAAGAGCAGCTACAATCCCTTCCAAGCGTGGCTGGTATTGTGCACTCCGCCATGGTTTTAAGAGACGCTTTCGTCAAAGATTGGACCTATCAGAGCTTCTCCGATGTAATGGGTCCTAAGATCAAAGgTTCCTTTTTACTGCACCAATTGAGCCTGGAGATGGATCTGGATTTCTTCGTCATGTTTTCATCCATAGTTTCAATCCTTGGTAACATGGGACAATCGTCATACGCAGCTTGCAATGCTTTTCAAGATTCTCTTGCCCAGTACCGCCGCAAAGTGCTCGGTCTCCCTGGACTTTCAATCAACTGGGGGCCAATCAGTGGAGCTGGCGTGATGGAACGAGAAAGTGCCGTCGCTAAACTGCTGACCATAGCGGGGCTGGGCTTTATTCATGCCAAAGATGGAGTCGAACATATGGCCAAAGTTCTCACTGAAGAGCCAAGCCGCTTCCAAATCGGTCTGTGTGGTGTGGACTGGCCTCGATTCCTAAAAAACAACACCGGGCTGAGAAAGACGTCTCGACTCTCCCTCATCACTGCTGAAATCAATACTTCTGAGACCACGACTACGTCAACCGAGTCTCTGGTGCAGAGAATTATGCTGGAGAAGGATCTTGAAAAGAGAAGCGAGCTTGTCATGGAATACGTTAGCTTGTCGGCGACAGAATGGACAGGAATGTCTTCACTTTCTGAGACtgatcttaacaagagtttgtaCAGCTACGGTGTCGACTCAACCGCGGCCCTGTCCATGAAAATGCAGCTTGAGGCCAATTTGCAGGTCTCTTTTGAGGTGTTCTACTTCATGCAGCCGGATACCACACCACTTAAACTGGGAAAAGATATCACAGCCAAGCTTAGTGGGCAAGCATCAAGTAAACAGCCTCAGAATACCAACCAAGAAGATGGACCTGCACAAGCACAACCAATGGCGGACGCATCTTTGTCAGCCATCATTTCAGAGAATCAGGTACAAGTTGTACCGCTGTACACTCCTGTAGGGTCGGCTATAAAGTTCTTTTGTGTCCATCCTTCACACCGTTATGCGTTGAACTTGGTGCCAATTTCGACGGGATTTCAAGGCCAGgATTTGGTATCTTTCTATGCACTGGGCTTTACCGATCCAACAGCAGTGAGTGAGGACTGGGGCAGTGTACGTGAACTTGCCGCACATTACGTTCAACTGATCACCGAGGAACAGCGCCATGGGCCGTATTTTCTGGGCGGATATTCATACGGAGGGCTTCTTGCGTACGAAATGGCCTCCTTGTTGACAGAGCAGAACAAGAGGGTTGAGTTTGTCGCcatgattgacacatttccTTGGTATCCCCGTTCACGGACTGTCAGCATTAGACTGGCTGCCATGCAGGATGATGCAAATTCGTCACGTCAACATGTTCAGCTTTATTTTGACAACGTTCTGAAAAGAATGGCAGTAGATACCTTAAAGATGGACGCTAACGAATACAAACACTTGATGGAGGAGCACACTCAAGACTGGATCATAGACGAACTTCAGAAAAGGAGTTTTGAGAAAGGTCTCGCGTCCTACGATTTGAGGGCTCTCAGAGAGGCTCTTCAAAAGAACCAAAGTATTGCCAATAGAACACATCAAGAATGGCAGCCGCCCAAGGTTCGCTATCGAGGTCCTCTCACCTTCCTAAAAAGCCAAAACGACCGCTTCTCACCCAGGCTTTCCTCGTCAGCTAGCATTGAGGAGTTATGGGGCCATCTGGTAGATGGAGGGATAACAGTGCTCGTTTGTCCTGGTGACCATTTTTCCTTGAGCGAGTTGCCTAATGCTCATGTGACAGGCAGTATCCTAGCAACAGCCCTCGCATTCAACTACCGCATGTTATTCCCGGAATTACCCAGACCTACAAGAACATTCAACCAAAGACGAGCCGTGGAAAAACTTTGCAGTGGAGTAAATGTGTTTCTTCACTCAAAAAGAGGGAACAAAAAGCCACACTTTGGAGAGCTTCTTTTCGATGAAGATACTCACAAACTTGTGTTGAGGTCAACGGCCGACGAAGGAGAAACGAATGAGAACGAGAAAACCAAACAGATAATTGACTTAAAAGaCCTCCGCATGGTGCAGCCAGGAAGACTCGTCTCCAGTGCCCATAAGTATGCCTGGCGCAAGCGAAGAGTTGGAGCACATCAAAGTGGGAACCTGGGGCAGGTTGCTTCCGTCATCACAGGCCAACGTGTCTACAGCTTAGAATTCACCGATTATTCCGATTTAAAGGCGTTTTATAACATGATAGAAGCTGTATTTGCTGTGACATTGTTGACCAGTTAG

Transcript

ENSPTBT00000029252

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
I1RVD8	Highly reducing polyketide synthase PKS6 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PKS6 PE=3 SV=1
P49327	Fatty acid synthase OS=Homo sapiens OX=9606 GN=FASN PE=1 SV=3
Q9Y7D5	Lovastatin diketide synthase lovF OS=Aspergillus terreus OX=33178 GN=lovF PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000672 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08659 all species →	KR	KR domain	Family	Interproscan
PF00975 all species →	Thioesterase	Thioesterase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR013968 all species →	Domain	Polyketide synthase, ketoreductase domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050091 all species →	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR001031 all species →	Domain	Thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775 all species →	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004312 all species →	Molecular Function	fatty acid synthase activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPTBP00000027963.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →