Gene detail

Detailed information of ENSPTBP00000030960.1 in Oculina arbuscula

Genomic Location: not available for this species
NR annotation: XP_020621987.1, DNA helicase B-like, partial [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families

Sequence

CDS

ENSPTBT00000032404

ATGACAGCAGCTAACTTCCTCAGAGAAAAAGACAATACCAAGGGTAAAGAAGATTCCGATTTCGAAAGCGATAGTGATGATGACTTTGAAGACGCTGATCAAGACTTCGAATTACTTCGCAAGCCCTCACGCAAACTTCGCAATGTTGTGGAGAACATGAAACAAATGGAATTCAAAAACGGTCGCTTTGTCGCGAAACCAGGCATCAGTCGTGTACGTGGTCGATTCGATCGCCTGTTCTCTCAACCTTGGTGGATGGTTGATTTGAAAATAAACGCAGCTCAATCATCAAGGAATGAAAAGCGGGCTTCCTCGCTTCCTTCATACAGTTACCGAACGGACGCCGATGTTGGTGTGGACGTGTTGTCGTTATTCTTAATTAAAGGGTGCGAAGTTGACTCTCATCACGTTGCACTGCTGTTGGAGTTTATCAGGAGTAGCAACCTCAGGCCCACATTGAAGGATCTGATGGAAAACTTGGAGAAATTTGCTGATTCTAGCGAAGACGGCCATTGTACTGTTGCTAGACAGATACAAACGTGCCTGAGATGTTCACCGACGGGTAAAGCATTCACTGTCCCAGGCTTTACAAAGCTTGCCCATGGGCTATTTCCAAACCAAGTGTGTAAAATCTTTGATGAATGCTCCCTGGAAAAGCTGGAAAGTCTTAGTGAGGCCCTTCAGAGTGAGAGTTGGGTCTTTGGttattggacagttctcagaaatagATTTGGTCTCTCTGGTTGTGAAGTGAAGTTGCGATCATTTATTGACTGTAATCTTCTCCAAAAAATGCCAGTCGTTATGCAAGATGCATTGCGAATATATGATGCACTGTCCAGGATGGTGCGCAAAGATGGTCACACATATGTGTTTATGTGGCAACTTAAAGCAGAACTGACCAACAATGTTACAAAATGGGAAGAGAGTCTGGCCTATTTGAGTGAGATAAATGTTGTGAAAACTTCTGAAGATCATCTGGGTAACGATTGCCATGTGTTTTTAACACATATTCGCggctttgagaaaaaaattgcacGGAACCTTGCAGAGATTATGCACAAAGAAGCATGGGTTGGTGACATTGAAATTGATGAACTAGTATTTGGTGGGGATGAAGACCAGGTCCAGGCCGCCAAACTCATAGCAGAGAATCCTGTGGTTGTGATGTCAGGGAGGGGTGGCTGTGGTAAGACATTTGTAGTATCAAAAGTACTATCAGAGGCACTAGAAATTAAAAGAAGAAAGGTCATGCAAGATAACCCAGTTGACGGTGATGATCAGCCTTCTGACCATGAAGCACAGGCTTGTCAACTCAAAACCAAGCTGGAAGAAATTGATGACGAGGTGTTACTCACAGCTCCTACTGGCAAGGCTGCATCATTGCTGGGAAAGCGAACTTTTCTTCCTTCGCACACTCTTCACTCAGTCATCTACAGCTTTCTCCGGTGGGAAAACGATCAAGCTGGAAAAGAAGATCAACACGAGGAATGGAAGTTCAGCAAGGTCCGTCTGTTAGTGTGTGATGAGTGTAGCCTGATCTCTGTGAGAGTGTTCTCTAAGCTGATTAGCGTTCTGAATGAAAATTCGCAGCTGCAGCAGGTTATTCTCCTGGGTGACATAAACCAGCTTCCTTCCATTGAGCCAGGCAATTTTCTTAATGATGTTTATCATGCTCTGATGCCGCATGGTGTTTCTGTTGCCCTAAATACTAACCATAGGGCTGACTCTGAACTTATTGTTCAAAATGCCATTAAAATCTCCATCCAGCAGAGGCCATTATTTGATGAATCGAGAGGTTTCTTCTCAGTAGAGTACCAACCAAGACGAAATGATGACGACAATGAAAGTAACAAAATTAATCATGTGATAAAAGAAGTGCTGCAAGGTAAAGAAACGTCATTCGTCTTGCCCGATCCTGAAGTCTCCCAATTTGTAGCATTTCGTCGAAAAGACTGTAACATCATCAACGAACAATGTGCTCTCCACTATAATGGTCATTCCATCAGAAATGAGCGCGGTAAACCGAATTTTCAAGTTGGGGACAAGGTCTGTGTTAGGCGGAATGTGGAATGCCTTGATGAATATGAAGATAAAGGGGTCAGGTTATGCAACGGAGAGATATTCTTCATCAGGGATATCATTGAAGAGATAGACAACAGGAATAAGAAGGCCCCCAAGTTCAGCTTGGACAATGGAGAGAAGATGGTGAAGATCGATTTTAGAAGCTTGAGGACTGCCAAACTGAGTCATGCCTGGGCCAGAACCATTCACACCTTCCAGGGCTCAGAAAATGACACTGTTGTCTATGTGGTTGGAAGTCCTTACTATCAGAATTGGCAGCATGTGTATACAGCAGTCACTCGAGGTGTGCGTCAGGTCATGATAATTAACAATCCCAGTTACCTGTTTCAAGCCATAAAGTCTCTTCCTGTTGAACGCCAgacaaaactgaaaaaagaCATAACACAAGCTATGAAGAACAGAAGTCGGCCTGATGAACATGATGATGGGTTGGAAACCAACACTCAGTTTGCCACTCAGACTGGTGGTTTTCACAAGAATGAATTTGCTCCACATTCCTTTGGTGTGATGGGCACAACTCCTTTCTCTGTACCAGAAGATCAAGAACTGGCTTCAGAATCGTCTGGATGCCATCTCGATGCTGCAGCAAGCTCAAATGATTTTTGCATTTCTAGAGAAAATCTGAGAAATAAAAGGCTCAAGCAAGATGAAGATGAACAGGGGCGCCTAGCCGCTTCGAGTACAGATGGTGCGTCTAGCTGTGGAATTAGTGCCCAACCCTACCAAGAAATGCCTGAGAACACTGTGGGAGTCAATAGTCTTCAGAGTCCAAGTCGCAAGAGACAGCATCCAGAAAGCACGGTTCTCTTGTCCCCTTCCCAAACACCTCCACGTTTCAAGCAATTCGCCTCGTCCCTTTCAGCAGTTAGCCCCTTAAACCAGTCCTCAAGAGACACCCAGCAAGCTGTTGCTTCTCGCCAACCAGCTGAAAATACACCAGCAAAGAAAGTGGTAATAATCATTGCGCAATTTGACCAACAGTGCAGAGTTTGCAAGGAGCCAATTTGCAAAAGCATAGACGAGATAACACCTGTCCGCAAGCAGGGCTGTGACAAATATTGGATTCATGTAAGATGTGCAACACGTGATCAGCGATGA

Transcript

ENSPTBT00000032404

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVF4	DNA helicase B OS=Mus musculus OX=10090 GN=Helb PE=1 SV=2
Q8NG08	DNA helicase B OS=Homo sapiens OX=9606 GN=HELB PE=1 SV=2
A0QS28	RecBCD enzyme subunit RecD OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=recD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13538 all species →	UvrD_C_2	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF13245 all species →	AAA_19	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027785 all species →	Domain	UvrD-like helicase C-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:2000042 all species →	Biological Process	negative regulation of double-strand break repair via homologous recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15254	HELB; DNA helicase B	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.