Genomic Location: chr7:27315721...27330348
NR annotation: XP_020615710.1, vacuolar protein-sorting-associated protein 36-like [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families
| CDS |
| ENSPTBT00000039345 |
| Transcript |
| ENSPTBT00000039345 |
| Protein |
| ENSPTBP00000037620.1 |
| UniProt accession | Description |
|---|---|
| Q7ZVK4 | Vacuolar protein-sorting-associated protein 36 OS=Danio rerio OX=7955 GN=vps36 PE=2 SV=1 |
| Q6DDF4 | Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis OX=8355 GN=vps36 PE=2 SV=1 |
| Q86VN1 | Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens OX=9606 GN=VPS36 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004780 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|PH|GLUE · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04157 all species → | EAP30 | EAP30/Vps36 family | Family | Interproscan |
| PF11605 all species → | Vps36_ESCRT-II | Vacuolar protein sorting protein 36 Vps36 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR021648 all species → | Domain | Vacuolar protein sorting protein 36, GLUE domain | Interproscan |
| IPR037855 all species → | Family | Vacuolar protein sorting protein 36 | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR040608 all species → | Family | Snf8/Vps36 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13128 all species → | VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0032266 all species → | Molecular Function | phosphatidylinositol-3-phosphate binding | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0000814 all species → | Cellular Component | ESCRT II complex | Interproscan |
| GO:0031902 all species → | Cellular Component | late endosome membrane | Interproscan |
| GO:0032509 all species → | Biological Process | endosome transport via multivesicular body sorting pathway | Interproscan |
| GO:0043328 all species → | Biological Process | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12190 | VPS36, EAP45; ESCRT-II complex subunit VPS36 | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Oculina arbuscula tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Oculina arbuscula, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
