Gene detail

Detailed information of ENSPTBP00000037697.1 in Oculina arbuscula

Genomic Location: not available for this species
NR annotation: XP_020615881.1, uncharacterized protein CXorf57 homolog isoform X1 [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families

Sequence

CDS

ENSPTBT00000039428

ATGCTGACGGCTGGTTGTATTTCAAACATAAAAACCATCGCAGGTAAAGACGAGGCACAAGAAGCATTCACTGTGAGAATTTTGGACATTTACAGACACATTGTCGACAAGAGCTTTCCCATTTTGGACCCCGATTTTACTGACGCTTTCGACGTCGTGATAACTGATGGTCGTTACAAGACGAAATGTTTGTTGTCAACTTCTTTGAATTCGCTCGTTTACGAACATAAACTGCGAAAGAATTCTATTGTCACCGTTGCTGAATGTAGCTCCTTGATTGACGAGGAATCACTGGAGCAAGCGCCTTATGTCATTCTTCAAGGTATAGAAATTTTAGATCAAGCGCCAGAGAATACGGAGGAAACCCAAAGTGAAATTGCATTTTGTGAAAATGCAACACAGAACGAAAAGGAAGAACTGCCTCTAGCTGCGTCTCGGGGTTATTATTTGCCACTGTGGAACGATGAAGACTACTTTGGTGCGAAGTGGTTTAGTGACCCACATTTGAATCCTTCTAACCCCATCACTAATGCAATCACCATTTTTGATCTTGATTCGTTTTGGAAAGCTCTGCCGCGTCCATTTCCCGCACTGATTGGAAGAGTAGTGAGTAAAAGCAGGCTTAATCACTACGGCAAAGCAACggatgaaaaaagaaaatatcccTACCAAGCTTACTTTGAACTTGAGGACCGCACTGGAACGGTCACTGTGTGTATCTGGAGTTCTTTATGTGTCCTGCTGTATAATTATCTTCAAGTGGGAGACATTGTCGCAATCCTAAATTACCGTGTTGCCAGAAAGTTTGGCCAGAGGAGTAATGCAGTCTACAACACAAGCCCTGCAGCAAGCATTGAGATATCTGTGAATCCTAGCAGCCCTACTTCAGAAGTATACAAACTGGGAACTGATGAGCTTGGTCCTGTTTGGAAATTACCTGCTGTACCATACAGGTTTATTGAGAGAAAATCACTTTCCAGCTTCTCATCAGGTTTAATATGCGATATTGTGGGAGTGGTGATGTTTGTCAGCCGAGACAACAGGGAGAGGAAGGCAAGCAGGTCTTCGTTTTGGGCCAGTAAATGGGTTCATCTAAAAGATGGAACAAGCTCCATGCCAATCATACTTCATCTTTATGCCTGTTCACAACCTGAAGTCTTTGATTCCATTGCGCCAGGAAAAGTACTTGTTTGTGCACGCATGCTCCTGAAAATTGAGGCTCAGGATTCAAAACATCAGAAGATTTGTTTCCTTACAACAACACGGGAATCACAGCTTTATGTTCTAAAGAAGCCATCAGATGTGAATGACAAGCCTTTCACAGGATCTGATGTCGTCAATGAAGTCATCAGATGGCGTCAATCTGATGAATCAAAACAGCTTCTTAGAAGATCTTGCAATGGAGGGTACTACAACTTTCCACCCTTGCCCGACTCCCTTGAATTATACAAGAGGACGTTCCCTCCTGAGAAGCCGATGGATCTAATAACAACGGTGAACCTTGGGTTCATACTGAAGGAGCTCCACTTCAGAGAGCATATACGCCTTCACATTCAGGGAGTAGTTGTAGCTTTGGAGTTTGTTCCTGCAGCTCGCAGTGAAGAAACTAGACACAGGACGTCTGGGGAGGTCACTAGCTCTCAGCTGTGTGAGACTCAGGGTAGTAGTGAAAACAGTGGAGAATCCTCTTCAGGTCATCTCACAAGTCAGTCCAGTGACAGGTCCAGACCTTCAACCAGTCAGAACAGTGCATCAGGTACTGATTCTTCACAAAAGGACAGGAAAAGCCCTACGAGAAATCGTCGCATGGAAACACGGAGTTTGAAAAACAGACAAGACTCTGAGTCAGAAAGTGAAGACGAGTCATCTGCCTCAAGCAGTAAATTGAGAACAAGGACAAAGACGAAACAAGGCTATGTCCCCAGACGGATTAATCCTAAAAGGAAATGCAAAAAAGTTGATCCGAAGAGCCTTAAACTGGTTTCAATCAAGACAAGAGGGCGCGAAGTTGGTGCAGAAGATGTGACACCTTCCAGGAAACGAAAATCGAGGAAGCGACTCGGCCACTTGCCAAAAAAAGTGAGGAGAAAAGCGACACCAAAGAACCAAAAGTCTACCGATATAGCTGGGAGAAAAGGGAAAACGATTTCTAAAGGCGCTCAACGGCCAGCAAGGAAAGATGAAGGCGTGTCAGAAATCTCTGATAGCGAAGCATCAAGTTCTGATAGATCAAAGAAGGCAGAGAAATATTACCCCTTCAGAATTCTGGATCAGACGTGGACAGACATGGCCTCAGATATCCCATTCTTAGGCTTGTCTAAGCCAAGCTTGCATGAAAACACTCTGCCCACACTTTGCAGTCGGGGACTTACGGACGTCAAAGTCGTACCGAGAGCTGATCGGCAAGGCTTCGTGAACACCGAAGGCTACTGGAGGCTTATGATCGCTGGACTCAATCGACGTGCGATCATAAACGCCATCTTTATACCCCAGTCCCCTGAGAGCGGGGAAGGCGCCAGCGACGAACCGGAAAACGGCGTCTTCTTGTCCGCTCTGGCGACAGGGGCGTTTTCGAACAGCTATCCAGTGGAGACGCTTTTGAATCACGCCAGCGAGGAGTTGAAAGGACGGCGATGTGTTTTTGTGTTGGATGTTTACAGTCACGGGCAAGACAAGGTGGAAGTTGTCATCAACAGGGCTTACTAA

Transcript

ENSPTBT00000039428

TGTAAATATGGCGGTCGATGTTGTGGAAGTGAAAATTTTCTCAATATGCTGACGGCTGGTTGTATTTCAAACATAAAAACCATCGCAGGTAAAGACGAGGCACAAGAAGCATTCACTGTGAGAATTTTGGACATTTACAGACACATTGTCGACAAGAGCTTTCCCATTTTGGACCCCGATTTTACTGACGCTTTCGACGTCGTGATAACTGATGGTCGTTACAAGACGAAATGTTTGTTGTCAACTTCTTTGAATTCGCTCGTTTACGAACATAAACTGCGAAAGAATTCTATTGTCACCGTTGCTGAATGTAGCTCCTTGATTGACGAGGAATCACTGGAGCAAGCGCCTTATGTCATTCTTCAAGGTATAGAAATTTTAGATCAAGCGCCAGAGAATACGGAGGAAACCCAAAGTGAAATTGCATTTTGTGAAAATGCAACACAGAACGAAAAGGAAGAACTGCCTCTAGCTGCGTCTCGGGGTTATTATTTGCCACTGTGGAACGATGAAGACTACTTTGGTGCGAAGTGGTTTAGTGACCCACATTTGAATCCTTCTAACCCCATCACTAATGCAATCACCATTTTTGATCTTGATTCGTTTTGGAAAGCTCTGCCGCGTCCATTTCCCGCACTGATTGGAAGAGTAGTGAGTAAAAGCAGGCTTAATCACTACGGCAAAGCAACggatgaaaaaagaaaatatcccTACCAAGCTTACTTTGAACTTGAGGACCGCACTGGAACGGTCACTGTGTGTATCTGGAGTTCTTTATGTGTCCTGCTGTATAATTATCTTCAAGTGGGAGACATTGTCGCAATCCTAAATTACCGTGTTGCCAGAAAGTTTGGCCAGAGGAGTAATGCAGTCTACAACACAAGCCCTGCAGCAAGCATTGAGATATCTGTGAATCCTAGCAGCCCTACTTCAGAAGTATACAAACTGGGAACTGATGAGCTTGGTCCTGTTTGGAAATTACCTGCTGTACCATACAGGTTTATTGAGAGAAAATCACTTTCCAGCTTCTCATCAGGTTTAATATGCGATATTGTGGGAGTGGTGATGTTTGTCAGCCGAGACAACAGGGAGAGGAAGGCAAGCAGGTCTTCGTTTTGGGCCAGTAAATGGGTTCATCTAAAAGATGGAACAAGCTCCATGCCAATCATACTTCATCTTTATGCCTGTTCACAACCTGAAGTCTTTGATTCCATTGCGCCAGGAAAAGTACTTGTTTGTGCACGCATGCTCCTGAAAATTGAGGCTCAGGATTCAAAACATCAGAAGATTTGTTTCCTTACAACAACACGGGAATCACAGCTTTATGTTCTAAAGAAGCCATCAGATGTGAATGACAAGCCTTTCACAGGATCTGATGTCGTCAATGAAGTCATCAGATGGCGTCAATCTGATGAATCAAAACAGCTTCTTAGAAGATCTTGCAATGGAGGGTACTACAACTTTCCACCCTTGCCCGACTCCCTTGAATTATACAAGAGGACGTTCCCTCCTGAGAAGCCGATGGATCTAATAACAACGGTGAACCTTGGGTTCATACTGAAGGAGCTCCACTTCAGAGAGCATATACGCCTTCACATTCAGGGAGTAGTTGTAGCTTTGGAGTTTGTTCCTGCAGCTCGCAGTGAAGAAACTAGACACAGGACGTCTGGGGAGGTCACTAGCTCTCAGCTGTGTGAGACTCAGGGTAGTAGTGAAAACAGTGGAGAATCCTCTTCAGGTCATCTCACAAGTCAGTCCAGTGACAGGTCCAGACCTTCAACCAGTCAGAACAGTGCATCAGGTACTGATTCTTCACAAAAGGACAGGAAAAGCCCTACGAGAAATCGTCGCATGGAAACACGGAGTTTGAAAAACAGACAAGACTCTGAGTCAGAAAGTGAAGACGAGTCATCTGCCTCAAGCAGTAAATTGAGAACAAGGACAAAGACGAAACAAGGCTATGTCCCCAGACGGATTAATCCTAAAAGGAAATGCAAAAAAGTTGATCCGAAGAGCCTTAAACTGGTTTCAATCAAGACAAGAGGGCGCGAAGTTGGTGCAGAAGATGTGACACCTTCCAGGAAACGAAAATCGAGGAAGCGACTCGGCCACTTGCCAAAAAAAGTGAGGAGAAAAGCGACACCAAAGAACCAAAAGTCTACCGATATAGCTGGGAGAAAAGGGAAAACGATTTCTAAAGGCGCTCAACGGCCAGCAAGGAAAGATGAAGGCGTGTCAGAAATCTCTGATAGCGAAGCATCAAGTTCTGATAGATCAAAGAAGGCAGAGAAATATTACCCCTTCAGAATTCTGGATCAGACGTGGACAGACATGGCCTCAGATATCCCATTCTTAGGCTTGTCTAAGCCAAGCTTGCATGAAAACACTCTGCCCACACTTTGCAGTCGGGGACTTACGGACGTCAAAGTCGTACCGAGAGCTGATCGGCAAGGCTTCGTGAACACCGAAGGCTACTGGAGGCTTATGATCGCTGGACTCAATCGACGTGCGATCATAAACGCCATCTTTATACCCCAGTCCCCTGAGAGCGGGGAAGGCGCCAGCGACGAACCGGAAAACGGCGTCTTCTTGTCCGCTCTGGCGACAGGGGCGTTTTCGAACAGCTATCCAGTGGAGACGCTTTTGAATCACGCCAGCGAGGAGTTGAAAGGACGGCGATGTGTTTTTGTGTTGGATGTTTACAGTCACGGGCAAGACAAGGTGGAAGTTGTCATCAACAGGGCTTACTAAACTAAAATATTGTTCAACTGCAGACgaatttccatttattttgtCCAGCCGCGTAGTCAACGCAACAATGTAGCTATCAGACACCAAAGAGGAGTAAACTTCCTGGATAATCTTGACTTACGTGAATCTTAAGAGTCACGCGTGACATCATGCCAGTCACGCAATGCACCCAGTCTTTGATCGAAACGTGAAAGAGGGGGCTACATTCACGACAAACTGTCGATAAAAACAGCAGCAACCGTTTAgtttaaaagtaaaacaaaaagagACATTTATGCCGTATGAATTGGGGTACACCGCTGAAAACATCAGacaaaatgcaagaaaaaaaatcgatcGAAACGCAGTATTGGCAACGTGAATCCTAGTTTAACTTTAAATCTCCATTGTGAATCAACATGAATCTAAAACTTCTCCCCACAGGTCGCCGTACATTCAACCAATTGGACGTTTGGAGAGTTTAACTGTTCAACAGTTTCCCCTTAGGTGATCGTTTGCTTAATTCCCAAGACTGTATGGTCGATACGGTTGcgtattatttattattagaAGAGATCAATAGTTGGTCATCTTGTAGCTTTAACTAAATGTTGCAAAGAACAGAGTAGCCTGCGAATGCAGCCGCTCTTCCTTCGCTCCCGCCCGGTTTGGCGCTCACCGGTTTGGCATTTTGCGAGAGAGAAACACTTAACCGGCcgggagcgatgagaggcggctgtattcgcaggctaagaaCAGAGCGAGCCACCTTTAAGTGGAGATTGTTACGATATAAACTAGGTTTTACGAACAGTCGAACCAGAGCCATCaaagaagaacaaaaacaaaaaaacggttttaaaaacaattgtcGCGAATCTTTCCACCGGGCTTTTAATTAATCCACTTTTATAGTCTACCCGACTATTTTTGGAGACATTTTGTAAAGTCCTCGTAGTAGAGGTATTTTTAACGAGTCATATTTAACGTCGTAcaaagttttcgaaaaaaatataaaca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NSI4	RPA-related protein RADX OS=Homo sapiens OX=9606 GN=RADX PE=1 SV=2
B2GV47	RPA-related protein RADX OS=Rattus norvegicus OX=10116 GN=Radx PE=2 SV=1
Q8C779	RPA-related protein RADX OS=Mus musculus OX=10090 GN=Radx PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17659 all species →	DUF5521	Family of unknown function (DUF5521)	Family	Interproscan
PF04057 all species →	Rep-A_N	Replication factor-A protein 1, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR040893 all species →	Family	RPA-related protein RADX	Interproscan
IPR007199 all species →	Domain	Replication factor-A protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14944 all species →	RPA-RELATED PROTEIN RADX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005657 all species →	Cellular Component	replication fork	Interproscan
GO:0006282 all species →	Biological Process	regulation of DNA repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPTBP00000037697.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.