Gene detail

Detailed information of ENSPTBP00000037737.1 in Oculina arbuscula

Genomic Location: not available for this species
NR annotation: XP_020629477.1, putative RNA-binding protein 15 [Orbicella faveolata]
Species Oculina arbuscula · all data for this species · gene families

Sequence

CDS

ENSPTBT00000039468

ATGGTCATGAAGAGGTCTTCTGATTCAGAGACGCTTACAAAGCCTAAGCGAATTCGTTCTCGAGAATTCGACGATAATGGTGTTCGCGATAGACTGTCTTCCCCGGACAGCGCGCGGGATAGTGGTTCCCCGATCCGCCGAAGTTCTTCTTTGACAAGAAAGGTCGATGATAGGACGTACAAACGCAGCTCAAATGTAAATATGCGAACCGAAAACAACTACCAAAATCAGCGAAAGAGAACCGACCGAGAGTCTGAACCCCAAATTCGGCTCACAAGTCTTGCCAGTCATATCGGAGATCAGTCAATGAAACAAGAAATATTCCACGAGTTTAAAAAGTTCGGAGGCGCCGAGATGACCGTGCACTTGTCCGGCCGGGATGACGACCGTTATGGAGTTGTGTACTTTCGAAACATCGATGATGCTCGAGAAGTAAGGCGTGCTATTGAACGCCGTGGACGTCTAACGCTGTTTGACCGACCAGTTCTTGTAGAATACGATTTTCAAGAAAGGACGTCTCGGCGAAGTTTTAGTCCGAACGAGTACCCGCAGAACTACAATCGACCGCCATCTCCAACACGCCGAACTCAACGAAATAACCCGCAGTTTGATCTTGATCGAAATCGTGCAGATAATGATCGTAAAAACTTCAAGAGTGGTGGTTCGTTTGGACAAAATCAAATAAGGCCTACAGAGAGGTACATCCCTCCCGAAGATGATCCAAAAGCTACGAGAACGCTGTTTGTCGGAAACTTGGAGACGAGCATTTCTAGCCAAGAGTTGCGTCGTGCTTTTGAGAGGTTTGGAGCAGTTTTGGACGTGGATATCAAACGACCGGCACGTGGACAAGGCAACACGTATGCTTTTGTGAAGTTTGCAGATCTTGATGTCGCTGCTAAAGCGAGGGTGGATATGCAAGGTGAAATTATTGGTCGTAACCGCGTGAAAATTGGCTACGGAAAAAGTCAACAAACTACCCGGTTATGGGTGGGTGGTTTGGGCCAGTGGACGTCGATTGTCGAGTTGGAGCGAGAATTTGATCGATTTGGTGCTATCAGACAGATTGATTACGATAAAGGCGATGATCATGCTTACATTTTGTACGACAGTTTGGATGCTGCATCCGTTGCTGCTCGAGAAATGCGTGGTTTTCCACTCGGCGGCGGCGATCGCCGGCTGAAGATTGATTTTGCTGATAAAGATCATTTACAAGACCCGCGTCTTCGGCAACCACTGACTCCACCGAGAAACCGTATCAATAACGTCGACAGAGTTGATGATGACTTGTTTGCTGTGGATCAGGGAGAAAGGACCTACGAAAGTGATCGACTGTACGAACGGAAGCGTGAACCTTCGCCTTACCGTGGCCGGGATTCACATCCTTCGAGCGAAAGTGATTTCAGAAACTGGCGTGAGGAAAGTAATTCCTTCAAACAAGATCTTGGTCGTCAGCCCGACCATGACAACTGGGAAAAGAGGTCTCAAGACAGAAATTCAAGGGGGCAGCAGCGCTATAGACAGCGAGCACCTCCAGTGGATAATTTCCAACCATTTGATCATTCACCCATACCACAGAGAGAGATTGACAACAGCAGAACTGGAAAACGTAGACCTCCATCTCCTTTACGGACCAAAGAATACAGGGACAATGGCAGTCCCCCTAAACGTCGTAGAAGCCCAAGAACTCGATCTCCATCTCCTAATCATGCTAACCACTCACGTACAACTTCACCTTCAGACTTGCAACGCCGTTCAAGTTCTCTAGACAGACGCTTCAGTCGTTCTCGGGGCGATGGATTGAATGCTGGTAATGGTACTGAGCGGAAAAGGAGCAGCCTGGATGATATTAATGACAGCAAAACTTCCAGTGATAAAGAGGATTCTGCTAAAGACGTGCAACCAAAGGAATCAACTGGACAAGAAAATGAGAATCCTGGTTCTGTTGGAACAGAAACCTTGCAAGACCTGGTCAAGAGATTTGCTGTTGCATGGCGTGGTGGACTCATCCTAAAAAATAGTGCGTTTCCTGTTCGGATGCATTTCATTGGTGGAAATCCTGAAGTTGCCGACTCACTGCTTCGTTCTGATGGATCTGCACCCTCACAGAATTCGGTTTTGCGGATTACTCAGCGTCTTCGTTTGGACCAGCCTAAACTGGAGGAAGTTACTCGAAGGATTAACACCGCTGGGGCTAGTGGTCATTGCTTGTTGCTTGCCTTGCCTGGTGTTCAAACTCCACTTCCCGAAGACCCAAATTCAGAAGAACCTTTGCAACACAGACCATTGAGGAATCTTATGACGTATCTCAAGCAGAAACAAGCTGCTGCAGTTGTTAACCTTCCTGTGATTCCTGGAAACCCAGCGACTACAAAGGATGATGTTGGTGTTTTGCATGCATTTCCTCCTTGTCAGTTTTCACATGAGCATTTGGTACGCATCGCTCCACACTTGTCGCCTGAACCATCAAAAGAAGATCATCTTGTCATTCTTGTTATCCGTGGCAGTGGCTGA

Transcript

ENSPTBT00000039468

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T37	RNA-binding protein 15 OS=Homo sapiens OX=9606 GN=RBM15 PE=1 SV=2
Q0VBL3	RNA-binding protein 15 OS=Mus musculus OX=10090 GN=Rbm15 PE=1 SV=1
Q8NDT2	Putative RNA-binding protein 15B OS=Homo sapiens OX=9606 GN=RBM15B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07744 all species →	SPOC	SPOC domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR010912 all species →	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR012921 all species →	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13190	RBM15; RNA-binding protein 15	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.