Gene detail

Detailed information of ENSQNNP00000000342.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047141222.1, SCF E3 ubiquitin ligase complex F-box protein grrA isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000000370

ATGTTTTCACCAGACATAGAATCAACTGATCCACAGCAAGAGATGACTGATGCTGCTAAAGAGCTCTGCATTAAAGACACATCTGATATCAACCAGTGCAAAGTTTTTGTGAGAAATATAAGTTATAGTGTTAAAGAGAGAGGGCTGTGGAATTTCTTTGAGTATTTTGGAAAGGTTTTGCGCGTGTCCATCCCCAGAGAGAGGGGATCGAAAAAACTTAAAGGATttggttttgttgttttctcaAATCCAATATCTGCTAAAAATGCTATTTGTGCGCATCCTTGGGAACTGAAATTGGATGACAGgTACATGACTTGCCAGAAAGTAAAAGAGAAGTCAGaaaGAAGTAATCAAGTTTCAAAACAGCAACATAACATAAAGaatTCAGATGATAGAATCAACATGGTCACTAATCACTCTCTCGCCGAAGAAGAATACAATTGTCAGTTTGATATGTTGCACGATGAACTCATTGTTGAAGTATTCCTTTACTTGTGTACGAATGATCGAATCAATGTTGAAATGGTTTGTAAAAGGTGGCAAAGACTGGTGTTAGATAGTTGGCGAAGGATTCGACAATTATCATTGAGCAATGTACGTAACAAAGAAAAGTTCTTTGTTTTAGATGACAGAATTTTGGTATCAATCATGCGCAAAGGttgtcaaaatttgaaatcacTTGACCTAACTACCTTGCGTGGTCTCTCTCAAAGAAGCTACAACATGATTGCGAAGACATGTTCCCAGTTGACTGAAATAAACCTTACGTACACCAATGTGGATGACAAATCGTTGAAGTATCTCGGTATAAAACTGCCTAAGTTAAAGAAAGTTATATTGAGGCGTTGTTCAAAGAGTGGGGAGAAAGGaTTGTGgtggtttttaaaaagtttaacgcACTTAACTACTTTCACTTGTATCGATTCCTCAAGAATTACCGGCAAGTGTCTTTTCATGCTGCCACCTACGATAAAAACCATTGATTTAACCGAATGTTGCAAGCTAACTGATGAAGGCGTGAGAAACATTGTTAAATGTCCCAGTGTGGTTTCAATAAACCTCTCGTTTTGTACGTCACTAACAGATGAAGCTCTCTTAGACATTTCCAAAaactGCAAATGTCTGACTGACTTGTCATTAGCTGGTTTGTCAGACAATGTGGGTGCGTTCCACCATCTTGTCCGGCTCAAAACACTGGTACGACTGGATGTCAGTAAGAACGATGGTGTGGATGATCTGTTCCTTAAAAAACTAAGCCAATCATGCATTTTTCTCCAAGAGCTAAACTTGGAGTCCTGTCACTCGCGCGTTACCTCTGTTGGAATCAAAACGTTGGCTTCGCTCTCAAACCTTATTCATTTGAACCTCAGCTACATGCTAAAATATGTGGGCGATAGCTGTCTAACTGACATCATTATGATGGGAAAATTGAGATTCTTACTACTGAGATgtacaaaactcattgatgaagGGGTAATGCTGTGTTTACATTGGTTGAGCGATCTGCAAGAACTAGACGTTAGCGAATTTTACTTTGTCGACGACTTGCTAGATTCTTATGTTGATCCTGCTGCGCATGCGCCGAAGATTCTGGCTGTAGGAGgGTCTGAAGTAACGAAGGAAGGATGGAAAATACTGGAGTTGGAGCTAAGTTGCCGTGTTAGTGTTTCTTCCCCGAGCCAAGTATTGTTGAGGCATGACAACGATGAAATACCAGCGCCGTTCTTTCCGTCTGactatgatgatgatgactccGAAGATGATGGCTTGTCTCTTGTAGAGATGCCAATTATCAATCATGACACTCCTTCGATGCCGGAAGATCTTGACAATGTCCACTCGGAAGGAGAGCAACCGGAGAACAGCGACCACGCGACTGCACCCACTCATGCTGTCAACTCTTCCCAGGTAAGTTTGGAAGAAGAAAATTGGGAGGATGAACTGATCATCGGTCAGGCCTGGGAAATACCCGCTCGAAGTCTAAGGCATTGTTACGGTTTTTACTAG

Transcript

ENSQNNT00000000370

GAGAATTGTATTGGGGATTGTATTTGATTAAATAGAAATATATCTTACTTTTTAATGCGGTTGTCTATACCACTATTCTTCACTCGATTCCGAGTAATCTGGCTTAATGGCGTACTAGAAATAACATCTATAACAGGCCTTGataagtgttttttttttctctttttagcaacaaaaataatattccAAAATaattggtatatatatataaagcgGGTAACAAAGAAGGGTTGAATCAGCTTCTTCACGATCAAACAATATCTGTTCCAGAAATATTCAAAGCAAGAAGAATTATTCTAATGTTTTCACCAGACATAGAATCAACTGATCCACAGCAAGAGATGACTGATGCTGCTAAAGAGCTCTGCATTAAAGACACATCTGATATCAACCAGTGCAAAGTTTTTGTGAGAAATATAAGTTATAGTGTTAAAGAGAGAGGGCTGTGGAATTTCTTTGAGTATTTTGGAAAGGTTTTGCGCGTGTCCATCCCCAGAGAGAGGGGATCGAAAAAACTTAAAGGATttggttttgttgttttctcaAATCCAATATCTGCTAAAAATGCTATTTGTGCGCATCCTTGGGAACTGAAATTGGATGACAGgTACATGACTTGCCAGAAAGTAAAAGAGAAGTCAGaaaGAAGTAATCAAGTTTCAAAACAGCAACATAACATAAAGaatTCAGATGATAGAATCAACATGGTCACTAATCACTCTCTCGCCGAAGAAGAATACAATTGTCAGTTTGATATGTTGCACGATGAACTCATTGTTGAAGTATTCCTTTACTTGTGTACGAATGATCGAATCAATGTTGAAATGGTTTGTAAAAGGTGGCAAAGACTGGTGTTAGATAGTTGGCGAAGGATTCGACAATTATCATTGAGCAATGTACGTAACAAAGAAAAGTTCTTTGTTTTAGATGACAGAATTTTGGTATCAATCATGCGCAAAGGttgtcaaaatttgaaatcacTTGACCTAACTACCTTGCGTGGTCTCTCTCAAAGAAGCTACAACATGATTGCGAAGACATGTTCCCAGTTGACTGAAATAAACCTTACGTACACCAATGTGGATGACAAATCGTTGAAGTATCTCGGTATAAAACTGCCTAAGTTAAAGAAAGTTATATTGAGGCGTTGTTCAAAGAGTGGGGAGAAAGGaTTGTGgtggtttttaaaaagtttaacgcACTTAACTACTTTCACTTGTATCGATTCCTCAAGAATTACCGGCAAGTGTCTTTTCATGCTGCCACCTACGATAAAAACCATTGATTTAACCGAATGTTGCAAGCTAACTGATGAAGGCGTGAGAAACATTGTTAAATGTCCCAGTGTGGTTTCAATAAACCTCTCGTTTTGTACGTCACTAACAGATGAAGCTCTCTTAGACATTTCCAAAaactGCAAATGTCTGACTGACTTGTCATTAGCTGGTTTGTCAGACAATGTGGGTGCGTTCCACCATCTTGTCCGGCTCAAAACACTGGTACGACTGGATGTCAGTAAGAACGATGGTGTGGATGATCTGTTCCTTAAAAAACTAAGCCAATCATGCATTTTTCTCCAAGAGCTAAACTTGGAGTCCTGTCACTCGCGCGTTACCTCTGTTGGAATCAAAACGTTGGCTTCGCTCTCAAACCTTATTCATTTGAACCTCAGCTACATGCTAAAATATGTGGGCGATAGCTGTCTAACTGACATCATTATGATGGGAAAATTGAGATTCTTACTACTGAGATgtacaaaactcattgatgaagGGGTAATGCTGTGTTTACATTGGTTGAGCGATCTGCAAGAACTAGACGTTAGCGAATTTTACTTTGTCGACGACTTGCTAGATTCTTATGTTGATCCTGCTGCGCATGCGCCGAAGATTCTGGCTGTAGGAGgGTCTGAAGTAACGAAGGAAGGATGGAAAATACTGGAGTTGGAGCTAAGTTGCCGTGTTAGTGTTTCTTCCCCGAGCCAAGTATTGTTGAGGCATGACAACGATGAAATACCAGCGCCGTTCTTTCCGTCTGactatgatgatgatgactccGAAGATGATGGCTTGTCTCTTGTAGAGATGCCAATTATCAATCATGACACTCCTTCGATGCCGGAAGATCTTGACAATGTCCACTCGGAAGGAGAGCAACCGGAGAACAGCGACCACGCGACTGCACCCACTCATGCTGTCAACTCTTCCCAGGTAAGTTTGGAAGAAGAAAATTGGGAGGATGAACTGATCATCGGTCAGGCCTGGGAAATACCCGCTCGAAGTCTAAGGCATTGTTACGGTTTTTACTAGAGGAGTTTTTAGCGTTTGGTGACTGAATGGGAGAATTGTATTGGGGATTGTATTTGATTAAATAGAAATATATCTTACTTTTTAA

Protein

Uniprot

Uniprot term	Description
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan