Gene detail

Detailed information of ENSQNNP00000001014.1 in Candelabrum cocksii

Genomic Location: chr10:5069196...5073849
NR annotation: XP_047142176.1, rRNA methyltransferase 1, mitochondrial [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99J25	rRNA methyltransferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Mrm1 PE=2 SV=2
Q6IN84	rRNA methyltransferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=MRM1 PE=1 SV=1
Q76NT0	rRNA methyltransferase 1, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=mrm1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010305 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08032 all species →	SpoU_sub_bind	RNA 2'-O ribose methyltransferase substrate binding	Domain	Interproscan
PF00588 all species →	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013123 all species →	Domain	RNA 2-O ribose methyltransferase, substrate binding	Interproscan
IPR047261 all species →	Domain	rRNA methyltransferase 1, methyltransferase domain	Interproscan
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR001537 all species →	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR047182 all species →	Family	rRNA methyltransferase 1, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46103 all species →	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016435 all species →	Molecular Function	rRNA (guanine) methyltransferase activity	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15507	MRM1, PET56; 21S rRNA (GM2251-2'-O)-methyltransferase	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.