Gene detail

Detailed information of ENSQNNP00000001110.1 in Candelabrum cocksii

Genomic Location: chr12:931947...937693
NR annotation: KAG5204014.1, hypothetical protein JEQ12_001990, partial [Ovis aries]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQNNT00000001185

ATGTTAAATTTGTTGAGAGAAAAGGGTTGGCACTTATCTGCGGATGGCGTTGAAAGATGCCGACAGTTGTGTGACGGTGCAGGTGAATCTGTAgaaaaaatcattgaaataGCTTTAAAACTTGATTTGCGGCATATTAGTGACAAGGTGTTACCGGAAGGCGTAAACAGTGGCAAAGTTGACTCGTTGGCTGGTCCTGTCGTGCTGCAGATACAGAAACAGAGTAACATCTCTGCACCAAATATCAACCAAGATTCCAATGCTGCTCCGCGCATGCTCAAGTTGAATTTAACTGACGGTGTAATTCATTGCACAGCCATTGAGTTCTCCCCTATTTCATCTCTTAACCAGCACTGCGCTATACCCGGCACAAAAATTTGCCTCACTTGTTCAAAGATAGAATTGCTTAATGGGGTTATACTGCTGAATGATAAGCAAGTCAAATTCTTAGGTGGAGAGGttgaaaaactgaaaaccaAATGGGAATTAATGAAAACGTCAAATACACATAGACTGGATCGCAATGCAACTGATGGGCCTCCACCATTTAAAGAGTTCAATGGAAAGCTGCCAACACATTCAAGAGGCAAAAGATCTACCAATAAAgATGTGTCAATCAACAAAGAGAGAGAAGCAAGTAAAAATCTACGTCAAAAACAACTTTCAAATAAGGAATCCAACCATGACCAACACAATAATAGACCAAGCAAAGTTCACGGGAGTAACCAATCAAGATCTAACCATGATCAATACAATGATAGGTCCAAACCAAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAATCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAATCAATTAAGATCTAACCATGACCAATATGATGATAAATCCAAACCAAGCAAAGATCATGGAAGTAACCAATCAAGATCTTACTGTGACCAATACGATGATAGATCCAAACCAAGCAAAGAACATGGGAGTAACCAATCAAAATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAGTTCATGGGAGTAACCAATCAAGACTTTACTGTGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACCGGGACCAATACGATGATAGATCCAAACCAAGCAAAGAACATGGGAGTAACCAATCAAAATCTGACCGTGACCAATACGATGATAGGTCAAAACCGAGCAAAGATCATGGGAGTAACCAATCAAAATCTAACCGTGACCAATACGATGATAGGTCAAAACCAAGCAAAGATCATGGGAGTAACCAATTAAGATCTTACCATGGCCAGTACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACTGTGACCAATACGATGATATGTCCAAACCGAGCAAAGAACATGGGAGTAATCGATCAAAATCTAAGCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAATCAATCAAGACCTTACCGTGACCAATATGATGATAGGTCAAAACCGAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACTATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACAATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTTCTGTGACCAATATGATGATAGGTCAAAAGCGAGTAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGAACCCAATCAAGATCTAACCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTATCGTGACCAATACGATGATATGTCCAAACCAAGCAAAGAACATGGGAGTAATCGATCAAGATCTAACCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACCGTGACCAATACGATGATATGTCCAAACCAAGCAAAGAACATGGGAGTAATCGATCAAAATCTAACCATGACCAATACGATGATAGATTCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGATCTTACCGTGGCCAATACGATGATAGGTCAAAACCAAGCAGAGATCATGGGAGTAATCAATCAAGACCTTACCGTGACCAATATGATGATAGGTCAAAACCGAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACTATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACAATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTTCTGTGACCAATATGATGATAGGTCAAAAGCGAGTAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATATGATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAgatcaaaataaaagtttgcATTATTGGTTAGACGAAGCAATTGTTTCCAAGTCACAAGCTATCGACAGAAATTATCCCTATGGTCAATCTCCTGTAATCATACCTACTACATCAAATGGTGCAGCTCATGCTTTAGATATCTACGGAGGATACAATGATGCATCGAAGATGCTGAATGATACAAGCATCCTAAATGCTGCAATTCTTCCCGAACTTCATAACGGTTATTACGAACAGCAGGCCTATATACAATGGTACgtaacacaacaacaaaatgaccaacagcaacaacaaccggccaattcaaattttcaaggacaaaacttttattttcaaccAAATGCAAATCTTTATCAATGA

Transcript

ENSQNNT00000001185

TTGTGCATTTTCAATTCATCTTTGATTTGTATCCAAAAGAGTGGAATTGTTAAACGTCTTCTTGGAGTTTTTATTCCTACTATTCTGAAtacataattataataattatgcAATAATTATGCGAGGAATATAACATTGGTGGTACTTACAATTATAAATAGGCACAAGTCACTAATATACACTAACGTGTCAGTGGAAGTTGAACTAAttgttctgttttttaaatattttgatgcaagtttctttatgattttagtgttttttaaagtgttttcAGTTCCCATTTTTCACTCAGCAACATGTTAAATTTGTTGAGAGAAAAGGGTTGGCACTTATCTGCGGATGGCGTTGAAAGATGCCGACAGTTGTGTGACGGTGCAGGTGAATCTGTAgaaaaaatcattgaaataGCTTTAAAACTTGATTTGCGGCATATTAGTGACAAGGTGTTACCGGAAGGCGTAAACAGTGGCAAAGTTGACTCGTTGGCTGGTCCTGTCGTGCTGCAGATACAGAAACAGAGTAACATCTCTGCACCAAATATCAACCAAGATTCCAATGCTGCTCCGCGCATGCTCAAGTTGAATTTAACTGACGGTGTAATTCATTGCACAGCCATTGAGTTCTCCCCTATTTCATCTCTTAACCAGCACTGCGCTATACCCGGCACAAAAATTTGCCTCACTTGTTCAAAGATAGAATTGCTTAATGGGGTTATACTGCTGAATGATAAGCAAGTCAAATTCTTAGGTGGAGAGGttgaaaaactgaaaaccaAATGGGAATTAATGAAAACGTCAAATACACATAGACTGGATCGCAATGCAACTGATGGGCCTCCACCATTTAAAGAGTTCAATGGAAAGCTGCCAACACATTCAAGAGGCAAAAGATCTACCAATAAAgATGTGTCAATCAACAAAGAGAGAGAAGCAAGTAAAAATCTACGTCAAAAACAACTTTCAAATAAGGAATCCAACCATGACCAACACAATAATAGACCAAGCAAAGTTCACGGGAGTAACCAATCAAGATCTAACCATGATCAATACAATGATAGGTCCAAACCAAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAATCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAATCAATTAAGATCTAACCATGACCAATATGATGATAAATCCAAACCAAGCAAAGATCATGGAAGTAACCAATCAAGATCTTACTGTGACCAATACGATGATAGATCCAAACCAAGCAAAGAACATGGGAGTAACCAATCAAAATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAGTTCATGGGAGTAACCAATCAAGACTTTACTGTGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACCGGGACCAATACGATGATAGATCCAAACCAAGCAAAGAACATGGGAGTAACCAATCAAAATCTGACCGTGACCAATACGATGATAGGTCAAAACCGAGCAAAGATCATGGGAGTAACCAATCAAAATCTAACCGTGACCAATACGATGATAGGTCAAAACCAAGCAAAGATCATGGGAGTAACCAATTAAGATCTTACCATGGCCAGTACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACTGTGACCAATACGATGATATGTCCAAACCGAGCAAAGAACATGGGAGTAATCGATCAAAATCTAAGCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAATCAATCAAGACCTTACCGTGACCAATATGATGATAGGTCAAAACCGAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACTATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACAATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTTCTGTGACCAATATGATGATAGGTCAAAAGCGAGTAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGAACCCAATCAAGATCTAACCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTATCGTGACCAATACGATGATATGTCCAAACCAAGCAAAGAACATGGGAGTAATCGATCAAGATCTAACCATGACCAATACGATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTACCGTGACCAATACGATGATATGTCCAAACCAAGCAAAGAACATGGGAGTAATCGATCAAAATCTAACCATGACCAATACGATGATAGATTCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGATCTTACCGTGGCCAATACGATGATAGGTCAAAACCAAGCAGAGATCATGGGAGTAATCAATCAAGACCTTACCGTGACCAATATGATGATAGGTCAAAACCGAGCAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATACTATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACAATGATAGATCCAAACCAAGCAAAGATCATGGGAGTAACCAATCAAGACCTTTCTGTGACCAATATGATGATAGGTCAAAAGCGAGTAAAGATCGAGGGAGTAACCAATCAAGATCTAACCATGACCAATATGATGATAGGTCAAAACCAAGCAAAGATCAAGGAAGTACCCAATCAAGATCTAACCATGACCAATACGATGATAGGTCAAAACCAAGCAAAgatcaaaataaaagtttgcATTATTGGTTAGACGAAGCAATTGTTTCCAAGTCACAAGCTATCGACAGAAATTATCCCTATGGTCAATCTCCTGTAATCATACCTACTACATCAAATGGTGCAGCTCATGCTTTAGATATCTACGGAGGATACAATGATGCATCGAAGATGCTGAATGATACAAGCATCCTAAATGCTGCAATTCTTCCCGAACTTCATAACGGTTATTACGAACAGCAGGCCTATATACAATGGTACgtaacacaacaacaaaatgaccaacagcaacaacaaccggccaattcaaattttcaaggacaaaacttttattttcaaccAAATGCAAATCTTTATCAATGAACTTAACATTATTTGCACttctttgttgtgtttttttacgCTTGTGTAGTATTTCTTACGGGTTCTTTGAAAAGTTGAAACTTGTATTATTTTCACCGTTCTGTTTCtatgtttctatatttctatattttgTCTAATTAAATTTTGTTACTGCGAACATTTTTCCCCCAACAATTTGAATCCGTCGCCTGCCAGTTTAagagaaataatgaaattcCACATGCTTGTAAATCttagttattttttatgtctTCAATTAATACTTTCTTTTTCGTTCTAttattaattctttaaaatgttaaagaaaACATCTTTATCATAAACATTGGTGAGAAAAATGACGAGAAAAAGAAAGATCTTGCATGGCGATGATGATGTCTTGTGTGcgggaaaaatatttaaggTTGACGCACCGTCAAGTGTGAAACATGGTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZMS6	Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1
Q91W18	Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4
Q6NYG6	Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005934 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21410 all species →	MAP6	Microtubule-associated protein 6	Family	Interproscan
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007882 all species →	Family	Microtubule-associated protein 6	Interproscan
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031422 all species →	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000001110.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.