Gene detail

Detailed information of ENSQNNP00000001932.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_004208435.1, AP-4 complex subunit mu-1 [Hydra vulgaris]
Species abbreviation CCOCK · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000002014

ATGTTTTCGCAGCTGTTCATATCATCGAGGCGAGGCGACACGCTGGCTTTCCGACACTTTCGTGACGACGTTACACGAGCCACACCTCAGATCTTCCACAAGCATATGAAGCGCTCTACACCGTCACCGCCGCCTCTCTTTCACGTTGATGGCGTTCATTTCATGTATGTGGTGAAGGGCGGCGTTTATTTTGTGGGCGTGACGTTGAACAACATCGCGCCAGTTCACGCGTTAGAGGTTTTGAAGAGGGTCGCAGTCCTTTGTAAGGATTATTGTGGCGAGTTGAGCGAGGCAGCCATTCACTCGAACTTTCCACTCGTCCACGAGTTACTTGACGAGATTATCGATTTCGGCTACCCACAATGCACGTCGGCCGAGCTGCTCAAAGATTACATTTTTAACCGGCCCGAACTGTTGCCGTGTGAACGCGGCACAAAACTGTTCGGAGCAGAACGTCGCCTGGCAACCACCTCTGTTCCCTccgttatgacgtcatcacaaAATGAAGTTTTCGTTGACGTGTTTGAAAAGTTGACGATTTTGATTGGCGCTAACGGTCACGTGATTCAATCGGAAATCCACGGCCGCATTCTCGCAAAAACGTTTGTGAGCAGTGGTCACACCGACATTCGAATGGGTTTCAATGATTACCTGCGAGTATCTGATGGCGCGAGTTCGACCAGGCGTGATGGTGTTATGTTGAACGAAGTAATATTCGGAGAGGGTGTAAACGCGGAAGCTTTTGAGCGCGATGGAAGCCTGTGGTTTCGTTCCACTAGCGGTGAGTTTACTGTGATGAAGTATCACGTGACCAACAACCTTCATTTACCCGTGCGCGTTCACTCGATACTCGAAAATCTCGCCAGCAACGATTTGTGCTTACACTTGAAGATGACATGTCACATTCCGCGCGGCGCGAACAAAATTAAGGTGTGCGTGCCTGTTCCAAAAACAACTATGCGGCTGATCAACCAGATTCCGTTGAACAATTCGTCCGTTGAGCTTAAGGACGCTATGGTCACGTGGTACATCGAGAAACTACCCGGCGAAAGCGAATGCCAGTGTcgtttaaaaatcattttatccGACGCGACGGCAACGTGTCGGAAAGAAGTCGGACCGTTAGCAATTGAGTTTGAGATTCCATCTTATTCGCAAGTTAACGTGAAGTACCTAAAATTGACGTCACAAAGGGGTCATAAGTTAAAACAATGGATCCGTTACATCACACACACCGATTCATACGTCGTTAGGGTCACGTGACCTGCGAACACGTCTTTCTATCTGcaaacttttaatatataatgttttcttttctaaatTTGGGTCGATTCATTCATTTCTGCAATAAGTCGAACGAAGtaaattaaccctaatgtatACGATTTTTGACCAATTGATTGTGTTTTGGAAACTCATGCTGTTATGCCCTCAAATTGTGGTTTTAAATGTTCGGCAAGTGTCGACTGCCAATACCTgaagggaagaaaatttcgcggttgacaGACCTAAAAGCTGCGAATGTCGATGATGAGACAATATGTTTGaatttcgcggtgggcagagtttaggggaatatttagtacgatataatttacgtCTACCTAAAttcattcttcaaacaaatcaaaggcatttctaagaactgTTTCCTCGATCATTCATCCTCTAGCTCGTCATTTTCTTTAATGAttgttgcaaaatatttactttgatCCAAATTCTTTTCTCGAGATTGATCGATTAATTCGTTCGATGGTTGAACTAGAGGTCGATTGAATGGAATGGAGCAGGGTTCTCTAAACCTTTTGATATTGCTTCAGTGATGTCGGTTGCTTTTCATCCATTTGTTTTCTCTGAGCTTTTGCTGGACAGGTTCAGTCATTTGTCCATGAAATACATCCATGATGAGTAATGCATATTGTTCTTCTCCAACACTGAGTTTTGAGCGTTCGACGGCAACATAAGGAATAATTATATCATCGAGCAAGTCTTGTGTGTCACTGAAATGTTTAAGAATTGCGCTTAAACTGAACGAATCTGGATATTTGAACTTCGAAAAACTTTGGGCAGTCTTTTCCACCATATATCAGCTGCATTGGAAGGAAATCGTTGGTAAAAGTTATACCGAATGTAGCTGTTATTGCTTGCTTGAACCTGCAATGCTGACATGTTTAGAATTTTTCACAGATAATGTGCGACTTGAAACGGGCGCATACTTTGAGGGCGTCTGATCGATATTTAATATCAACGAATGTGgga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SB50	AP-4 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP4M PE=2 SV=1
E2RED8	AP-4 complex subunit mu-1 OS=Canis lupus familiaris OX=9615 GN=AP4M1 PE=3 SV=2
Q29RY8	AP-4 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP4M1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR050431 all species →	Family	Adaptor complexes medium subunit	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529 all species →	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0090160 all species →	Biological Process	Golgi to lysosome transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12402	AP4M1; AP-4 complex subunit mu-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.