Gene detail

Detailed information of ENSQNNP00000001936.1 in Candelabrum cocksii

Genomic Location: chr5:14451070...14458137
NR annotation: XP_021362538.1, muscle, skeletal receptor tyrosine protein kinase-like isoform X3 [Mizuhopecten yessoensis]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQNNT00000002018

ATGATGGTCTGTGTAGTGCTGCTGTCGATCATAATTGCCTGTTCATCGTTTGTCAAGATTAATGCCGAGcagaataatattttaaacgacTGCGTTGCATATATCAACAACAAAAGCGGTGTGTGCGGCCAATGGCTTACAGGAAAACGTGTGAATGTTGACTCGATGACCCAACTAGAGGCTAACGAACGCGTCATCGCGAAAACATTCACTGACATATCATTTGCAAAAAGTGTCGCAAAGGCAATGAGGTTTGGAGCTGATAAGCGTTTGTCTCTGATCAATGCAAACTCTGATATCGAAATGTTAATATCAATCTTGATCGGTCCAACATTTGATCAATGTAAACAAGCCTTGCTGAAGATCTTTTGTTTCAACTCCCTCCCTCCATGCGTTCCTGCAGGCAACGCGAGCTACGTTACTACAAAACCATGCAGGGAGGAGTGCAGCTATGTGGAGAATGTTATTTGTAAGAATGAAAGACCACTGTTTGATCAACTCTATAAGTTCGGCGTCAACGTCCGCTTTTTCAACTGTAACAACAACTTCACAAACTACAAAGAAGGTGAAAACACGTGTTACATTTCAGAACGTGCCAAAAACGTTACAAATGCTTCACGAAAGAATGTCGCATCAGTGATAACATTTCCACTGGGGACAACAACCAAACGACCTGAGAAGTTTCTAGAAAAAACACCAACCTTATCTAATCATGTGAATTTCATAACCACGCGTTTGATATCTACGTCGTCACATGTTCCCAACCCTTTCACGACAACAGCAGGGCATGTTAAATCATCGGTTTCATCAACTCTGAAAATGACGAAAACTCCGGTGTTAACTCCCACATCAAGGGCAACTGAAAGTCCTTATAAAAGCAACTGCCCTCTGTACAGCGATGTTCTTCCTGCCGGCTTCTGCCTCCATGAAATGGAGGGCCTGAGAATTTATCAAAAAAGAGACGAGGCGTTgggaaaagataaaaatgtaAGAATATTCTACGATGAAGCTGTTCCTTTGGTCGCAAATCTGTTGAGTAAaagttttcaatcaaaacgGGAACTGCTTCAACAGACGCTCGGAAGTTGTTTTGATAATGTGAAAGATTTGCTGTCGAACCAGGAGTACCCCACTGCGGAGGAATTCTTCTACTGCGTGAGTACTATCAAACGATTCACTTGCCAAACACACCACCCCCTATGTTTGGTGAGCGGAGATAAACACCGGGAACATCTTTCACCAGTCTGTCGAGAGAGCTGCGTACAGGGTCTTGAAACAATCTGCAAGAAATCAGTCAACATGATGCGACAGATGAATGCGATTAAATTAGCCTGTCCGTCAATGCTTTTAATCAACGACAGACTGTTCTCTGTTCCCATGTGCTCAGCCTATCCCTCCTGGAATGACAGTCATTTTTCTATTTGTCAATCGCACAGTCCTATAGAGGagatcaacaaaaaacatgttaCACAAAATTGCTACCAGGGAATCGGTTTGATGTATAATggaacaataaacattacggAAACCGGAAAAAAATGTATTCGTTGGGATCAAAACTTTTCCATGACTGGTCGTCCTCCTTACGAACATTTGCGTGAGAATTATTGCCGTAATATTCAGGGGCGTGGTTTCAAACCATGGTGCTATGTGAGTTCAACTTATGACATTTGGAAATGGGAATATTGTGCTATAGCAAAATGCAATGATGACTCTAACATGTTTCCAAATGATGCAGGACCGCCATCACTTGTGAACAGTACTGTGCGAATTCATTTTACAACTTGGGAGCGATATCAGTTAGAGATTATCAGCTCAGTGGTATCTGGGGTGGTACTCACCATCTGTTGTATTATCGCGTTCATCGTTTATCGGTTGCGAGTGAAACCGAGTCGGTCGAACGAGACACGAGTGGCGTACGAGACAAATATCAATACGGCCGAAGAAATGCGGAGTGTGTTGAATATGGACATGATGACGACttcaaatgaaaatctttCTACGTGA

Transcript

ENSQNNT00000002018

AACGTAATATATTGTGTGCTGGCATTTAACCTGAATCATGATTTCATGAAATGCAAATCTATAGCTTTAGCTATTTTTAATCCTTTCTCGGGCGGGTCTATTGAATACGTCAAAGCAATTCTGGGAACTTCCATGCATTCATGTAGAAGCAACTGATTGAGTGAAATTACTTTGATGATGGTCTGTGTAGTGCTGCTGTCGATCATAATTGCCTGTTCATCGTTTGTCAAGATTAATGCCGAGcagaataatattttaaacgacTGCGTTGCATATATCAACAACAAAAGCGGTGTGTGCGGCCAATGGCTTACAGGAAAACGTGTGAATGTTGACTCGATGACCCAACTAGAGGCTAACGAACGCGTCATCGCGAAAACATTCACTGACATATCATTTGCAAAAAGTGTCGCAAAGGCAATGAGGTTTGGAGCTGATAAGCGTTTGTCTCTGATCAATGCAAACTCTGATATCGAAATGTTAATATCAATCTTGATCGGTCCAACATTTGATCAATGTAAACAAGCCTTGCTGAAGATCTTTTGTTTCAACTCCCTCCCTCCATGCGTTCCTGCAGGCAACGCGAGCTACGTTACTACAAAACCATGCAGGGAGGAGTGCAGCTATGTGGAGAATGTTATTTGTAAGAATGAAAGACCACTGTTTGATCAACTCTATAAGTTCGGCGTCAACGTCCGCTTTTTCAACTGTAACAACAACTTCACAAACTACAAAGAAGGTGAAAACACGTGTTACATTTCAGAACGTGCCAAAAACGTTACAAATGCTTCACGAAAGAATGTCGCATCAGTGATAACATTTCCACTGGGGACAACAACCAAACGACCTGAGAAGTTTCTAGAAAAAACACCAACCTTATCTAATCATGTGAATTTCATAACCACGCGTTTGATATCTACGTCGTCACATGTTCCCAACCCTTTCACGACAACAGCAGGGCATGTTAAATCATCGGTTTCATCAACTCTGAAAATGACGAAAACTCCGGTGTTAACTCCCACATCAAGGGCAACTGAAAGTCCTTATAAAAGCAACTGCCCTCTGTACAGCGATGTTCTTCCTGCCGGCTTCTGCCTCCATGAAATGGAGGGCCTGAGAATTTATCAAAAAAGAGACGAGGCGTTgggaaaagataaaaatgtaAGAATATTCTACGATGAAGCTGTTCCTTTGGTCGCAAATCTGTTGAGTAAaagttttcaatcaaaacgGGAACTGCTTCAACAGACGCTCGGAAGTTGTTTTGATAATGTGAAAGATTTGCTGTCGAACCAGGAGTACCCCACTGCGGAGGAATTCTTCTACTGCGTGAGTACTATCAAACGATTCACTTGCCAAACACACCACCCCCTATGTTTGGTGAGCGGAGATAAACACCGGGAACATCTTTCACCAGTCTGTCGAGAGAGCTGCGTACAGGGTCTTGAAACAATCTGCAAGAAATCAGTCAACATGATGCGACAGATGAATGCGATTAAATTAGCCTGTCCGTCAATGCTTTTAATCAACGACAGACTGTTCTCTGTTCCCATGTGCTCAGCCTATCCCTCCTGGAATGACAGTCATTTTTCTATTTGTCAATCGCACAGTCCTATAGAGGagatcaacaaaaaacatgttaCACAAAATTGCTACCAGGGAATCGGTTTGATGTATAATggaacaataaacattacggAAACCGGAAAAAAATGTATTCGTTGGGATCAAAACTTTTCCATGACTGGTCGTCCTCCTTACGAACATTTGCGTGAGAATTATTGCCGTAATATTCAGGGGCGTGGTTTCAAACCATGGTGCTATGTGAGTTCAACTTATGACATTTGGAAATGGGAATATTGTGCTATAGCAAAATGCAATGATGACTCTAACATGTTTCCAAATGATGCAGGACCGCCATCACTTGTGAACAGTACTGTGCGAATTCATTTTACAACTTGGGAGCGATATCAGTTAGAGATTATCAGCTCAGTGGTATCTGGGGTGGTACTCACCATCTGTTGTATTATCGCGTTCATCGTTTATCGGTTGCGAGTGAAACCGAGTCGGTCGAACGAGACACGAGTGGCGTACGAGACAAATATCAATACGGCCGAAGAAATGCGGAGTGTGTTGAATATGGACATGATGACGACttcaaatgaaaatctttCTACGTGACGAAACCTAAATCATTCGGAGTCGTTACTCGTTGGAGTAGGTCAAATCGCGACTAATCTTCCATCAATCTTGAACGATAAAGATAACTTACAACATTTACCGAACATCTGGTAATAACAGACATAGgcaaacaatttaatttgaaGAATTTGACAAGACGGTATATTTCGTGTTTGTACCTTAAATGCCATTTAATAATTTCTAATTAAATACGGTTTCTATCAAAAGGCGAAATTTTAAGAGGGGGTAACTTCACAAAGGCGTTTTTGTTTCTAGCTAACCTGTTGGAGCTGTTTGTTGTAAAGTATTGGAGGGAACTCTATTTTTTGTCTCCAATTTGGGATTTTTCGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000001 all species →	Domain	Kringle	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR018056 all species →	Conserved_site	Kringle, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000001936.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →