Gene detail

Detailed information of ENSQNNP00000002233.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_012558683.1, lysine-specific demethylase 2A isoform X2 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000002329

ACGTTTTAAAGTTTCTTGTACAGTTTTTACAATTGAATTTGTTTCCGGGATTCGCTTTATGCATTTTTTCTCCCAAATGAACGTTGGTTATCATCTTGACAGAATAGAGTAAGGAAGACACGTGTTTATGATGCAAGCAAGATCAATGATGTCATAGACGGAAGAAGACAGTTTGATGTAGAAGAAAAACTTGTTGATGAGAAGTTCAacgaaaatttaaaagatgttGTGCTAGATCTTCAAGGAAATGAATGCCAGATCCTCAACTCTTCAGCATCTCTGATGTCCGAAGTTATGTAGgCTCTCGTCGATTACTTGATGTTTTTGACTGCGAAACACATCAAGCGAGTCAAATGAGTGTCTACCAATGGGTGAAGTATTATACAGGAAGTGAGCGAGACAAAATTCTGAATGTCACAAGTTTAGAATGCAGCCATACGGGACTTGATAGATTAGTAAAATGTCCTGATGTTGTCCAAGATCACTTGGATTGGGTCCAGATGGTGTGGCCGAAACATCTCATTGCCGAACAAAAAGACACAACAAACAGTCTTGAAAATATGAAGTACCCGAAAATACGCAAATATTGTCTGATGAGTGTGGCTGGATGCTATACAGATTTTCATATTGATTTTGGTGGAACATCTGTCTGGTATCACATATTAAAAGGTGCCAAGGTATTCTGGCTAATTCCACCAACAGAGAACAACTTGATGTTGTATCAGAATTGGGTTCTTTCTGGCAGACAGCAGGATGTGTTTCTTGGTGATATAGTTGACCAGTGTCATCGAGTACATTTGATAGCTGGTGATACATTCATGATACCTACAGGTTGGATTCACAGTGTGTACACGCCAGATGATTCACTGGTTTTCGGTGGCAACTTCATCCACAGCTACAACATCCCACTCCAGTTGAGGGCTGTTCAGATAGAGGAAAACACACATGTTCCTAAAAAGTTGTGTTTTCCTTTCTTCTTCGAGTTGCACTGGTACATGATTAAAGCGTATGTGGAAATCTTGGAGAGGGATGTGGACGAGAGAAGACTCATGGAGTTTGATAATACATCGCACAAATCAAAATGGTCCTTTGTTTACTTTACCTCTTACGAAATTGAAGGTTTGAAggaaatctgcagctcgttcaGAAGTTGGCCGTCAGCAAGAAACAACTTCCCTGCCAATCTGAAAGAAGATACAATCGATCTACTAGACAGACTCGAAGAGTTACTTCAATGCCATGAAGAGGATGACCAGGTTCTTGCTTGCAGAGGAATTAACATCTTCGCGCAGTTCAAAACTGAGaCACCCTCATCTACGCCTCCTGCAAAATGCAATTCGCCGTCCGCCAGTGAATCCCCCGCCAAGAAATTGAAGTTGGATCGGCCGTCATTGTACAGAAAGTGCATGAAGAAATCGGCGAGGAAATCTTTTCGCCGAGTGAGATGTCGCGAGTGTGAAGGCTGTCTGCGCGAGAATTGCAACGAATGCAGGTATTGTCGGGACATGCCCAAGAATGGTGGCCCGAACGTACTGAGACAATCGTGCAGTAGAAGATTCTGTCAGAACCCCAAACTTCCCTCTTACGTTGAATGCTGCAAGTGTCGTTTAAAAGACGCACAAGTGCTGATGGAGTGTTCCATCTGTTCAGACATCGTACACCCAAGTTGTCTACAGAGAACATCCCCCTGTAAAATCTCCACGAAAATCAACAATTGCTGGGAGTGTCCGGAATGTTGTTTGGACAGTCAGTCTGAAACGTTTACCGAAGACAAAATCAACGGACATATGAGCGACTACAAGCGAAAGGTAATCGAGCgaataaaatttcaagaaaccCAAGAGAACAAAAACCCGCTACGTAATAATCTCATGATCAAAAAGGTGCAAAACTTAAAAGTTATACTGCAAAAAGCAAAACTGAAGCAAGAGTCGATAAAGATGGGACCATCTAAACAAAATGACCCTGTGATGTTTCCTCGCGAAGAAAAGCAGCCTATTGGGAAATCAAAgATGAATCGTGCAAGGAAGGCGTTGGAGTGCAActtatttcttcaatttttttaagtagACCACCGTTCGAATAGTGGCCCTCGCCTAATCTTTATTATGTCAATATAATCTTTCCTGCTACTATTAGGTGGTATAGTACTAGTAATCTCAATAACGCCTCGACCTTTTTATCAATCGTACTTCTTACAGATGCATTTATTTCTCTGCTTTCTCTATATTTGACCAGTGAGGTGACTTATAACAAAAGTGATGCCTTGAATCGTCCAGGTTATTGTTGCTAAGATACTGAATGATGCAACAGGCTTTATGATTTTCAGTCTTAATGGATTTCCACAAACTTCCCGCAAAAGGTTAGGGCATTCTACTATAGCCCTAAGTAATGCGGTGGTTGTACgtaatataaaatatagtCGCGTGTTAAAGGAAACTGTCTACAGCTTGCATTGTAGCGATTAAGAATTGCGACGAATGCATCTAAGATAATTTTTAGCAATTCAGAGATATCAGCCAAATTTCTCATGgaaatattcaattttttagcaTTCGTACTAATTTTTAGTTTCTATTTCCGCCGCTATATTTGAATGTCATCGTTTCGTGCATAGCATTTTATCATATCCTCATTTACGTAATTTTGTATTACTAGGTTGCTGCTTCAGAAGATGCGCCATCTTGTCCAATTCGCCCATTGCCATTACGCGAGGGAGAAAATGTGTCTCGATTACCCAAACAATGTTGGGTCCGTGTGTTTGGGTACTTATGCGTACCGGACCTTTGTGTAAGCATGTTGGTGTGCAGGTCTTGGAACGAATGGTGTTTAGACGGGAGTTTGTGGCGAACGATCGACCTATCAAACAAACGTATCACTCACTCTTTGCTATGCGGTGTTATTAGGCGACAACCAATCGGCGTTAACCTATCCAGTAGCAACATTAACGGCGAACAACTGCAATGGCTTCTCGAAAGATTGCCTCGTTTACAGAGCTTGAACCTCTCTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q640I9	Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1
Q8NHM5	Lysine-specific demethylase 2B OS=Homo sapiens OX=9606 GN=KDM2B PE=1 SV=1
Q6P1G2	Lysine-specific demethylase 2B OS=Mus musculus OX=10090 GN=Kdm2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001471 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF17811 all species →	JHD	Jumonji helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR050690 all species →	Family	JHDM1 Histone Demethylase	Interproscan
IPR041070 all species →	Domain	Jumonji, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123 all species →	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482 all species →	Biological Process	protein demethylation	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000002233.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.