Gene detail

Detailed information of ENSQNNP00000003161.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047144909.1, WD repeat-containing protein 48 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000003284

ATGACGACCAATGTTGGAAGTTTCCATTCGAAACGTAAGATCAATGTTTCTTTCTGCATACGGAATGAAGTGGAACCAAGAAATAGACTTGGAATAAATGCGCTACAATATGATGCTAGATTAAGGCGATTGTATACGGCGGGTAGGGATTCTATTATACGATGTTGGGACCCATACAATGACAAGaatcCATATGTGGGCACCTTTGAACATCATTCAGACTGGATCAACAGTATAGTGCTTTGCCAGAACGGAAAAACTtTGTTATCGGCTTCGTCGGATACAACACTCAACGTCTGGAATGTCCAAACAAACTTTTGCTTGTCAACGTTACGGTCGCACAAAGATTATGTGAAAGCACTGGCCTACGCAAAAGACAAAGAATTGGTCGCTAGCGGCGGATTCGACAAGCAAATCCTGTTATGGGATGTAAACGTTTTGACATctctaacaacaacaaacaacactGTGATGGCGTCTTCACTATTTGGTCAAAAGGAATCCATCTACAGTTTAGCAATGAATTCGTCTGGAACGCTGATTATTTCAGGCTCAACTGAAAAGGTACTTCGCGTTTGGGACCCTCGGACCCACATGAAGTTGATGAAGTTAAAAGGCCACACGGATAACGTCAAAACAGTTGTTATAAAGGCTGATGGTTCTGAAGTAAATATCTTTCTTGTTGCGAACTTGTCAAACAAAGTAAACTTGCATTGGGGCAAGGATGATGCACAGAATGTCTTTCTTATATATACATCTACATTTTGTTGGTCACAAAAAATAGACAGCCAAGTTTCCCCCTTGGAATAtatcgcaaaaataaacaaactgcCAAGTGATAAGAAGACACTTATGACATTATGGTGTTTCAAAAAACGAAATttggaatttaattttatgcATAAATACCATCTAATTTCGAGTGTTGTCACTGATGGCGGTCTCATTTATGTTCAGTGTCTATCTGGGAGTTCGGATGGAACAGTCCGTTTATGGTCCATCGGGCAACAACGTTGCATTGCAACTTATAAAATTCACAACGCAGGCGTCTGGACATTAGTGGCCGACGAAAATTTCAATTACTTCTACTCAAGTGGAAAGGATAAGAAGATTTATTACGCTGATCTCAACATCGATGACAGTCCAACGTTGCTTATCGAAGAGAAAAACCCAGTTCTATGTATGCAACTTATTCCTGATCCCCTGTCATTGTGGGTTGGGACAACAGGTTCAGATTTGAATTATATTGTCCTGTTTTCAGGTGCTCCCAGTATAAAGCAGATCCATGTGTGCAACAACAAAAGGCACGTTCTCACAAAAAACTCTGTAAATGAGGTGGAACTCTGGGATGTCTTGAAGGTGAGGTTGATTTACGGTGACATCAACTTTGACGATGAGTGCACGAAACGAAAAGTAATGATCCATGTGCCAAATTGGTTTACTGTGGATGCGAAAACCGGTGTAAGTAAGCTTTTATGTAGTGAGGCAGGCAGCAAGCCTTTCGTAAATTATGGGGTTCTTCTTCTGCGTGCTCTATTTGAACACTGGCCAGAAACCAAACCTGTTGAATACGATGAAAAGGAAGGCTTGAACATTCCAACAAGTGAGAGCAGCACACCTTGTAATGGCTTCTTTTCCGTTGCACCTCACACGCCAATGACTTTCGTAGAGGGAATTGGCTGCGGACGGACATTCGTTCGATTTTTGGTTGGCGAAGCGAGACGGGAAAGCGAGACAAGCAACTTCGCAGCTTTCATTCCTTCCTGGGTTACAGACATCGTCGTTAAGAACGACCAGCCGAAATTCAATAAGATCACTTTCATGCTGATTCCCTTAAACAATAACTCGAAGAGCAATAATAAAAGGGACCGTTTAACAGCGAGCGACATGATTCACGTGCGGAAAGTCATGGAGCACGTGTACGAAAAGTATGTTCTAGCGGACGGTAACTCGTCGAACAACGACAAGCCAGCAATGGCTCCCGAAGACCTTGCAGAGCTGGCTGAAACGAAGATTGAATTGCACTGCAATGATATGCATTTGGATTCGAAAATGGACCTACGAACCATACGTCACTTTATATGGCGAAGCAGCTCAGATCTCGTACTCAATTACCGTGTGCTGAAGTGA

Transcript

ENSQNNT00000003284

Protein

Uniprot

Gene family

Uniprot term	Description
Q8TAF3	WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1
Q32PG3	WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1
Q05B17	WD repeat-containing protein 48 OS=Xenopus tropicalis OX=8364 GN=wdr48 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	ULD\|UFD\|RAWUL
Ubiquitin Family	ULD\|UBL\|SUMO
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11816	DUF3337	Domain of unknown function (DUF3337)	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR021772	Family	WDR48/Bun107	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15361	WDR48, UAF1; WD repeat-containing protein 48	-	DNA repair and recombination proteins	ko03400	deepkoala