Gene detail

Detailed information of ENSQNNP00000004299.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047130922.1, epithelial splicing regulatory protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000004465

ATGATTATAACGAGCGAGATCGCAACGCAGCCTGATGTTTTCTTAATATGGTATGCTACTGCTTCTGGGGAGAATGACGAAATGCTTGGGGCAGATGAATCTCCGATTGTCTGCATCAATTGGGTGGCCGTGGAAGTTGTTGACAACAAGATCATGCGCGAAGGAACCATTTTCGTTCGTGAAGAAAATGACGAAGAAGAGGACGATGAAAAATCACGTGTTACTTTAAAAGAAGCAACCAAACAGATTGAGGAGTTGGTGTCTGATCTTTCCGGTTGCTCCCGTACCGTTCGTCTTGTCACCGAGAACGGCTTGCACCTGCGCCAATGTCTCGTCCCCAGGGCGTTCCAACTGGACATCAAAGTGCCGgagttttttcttaaatacaTCGACATCAGAAAAGAGTACAGATTTTTCACTGGCAAAATGAACAGCTTCAAGAACCTTCAGGAGATCGCTGGAGATATGGGCATAGAAGAGCAGGGTCTGCTTGCAGTGGGCGAAGATAAATGCCGATTTTGCGCTCGAGTGACTCAATATCTTTTGAAGGAAGGACATAAGTTCGGCAAAGTTGAAAGCATCGGAGTGACGCTAAACGATGGTATTCCCACGGGATACGTAAAAGACGACACGATTGCGAGGGCAAGAGGTCTACCGTGGCAGGTTTCGGACGTGGATGTGGCGGAGTTTTTTACTGGGCTCAATATTGCAAAGGGCGGAGTTGCATTGTGTTTGAATATAAAGGGCAGGCGTAATGGTGAAGCTTTAGTGAGATTCGAGACGACTGAACACAGAGATATGGCGTTAAAGAGACACAAACACCACCTGTTGGGACGATACATAGAGGTCTATAAAGGAACAGCTCAAGAGTTTTTGAAAATAGCCAAAGGACCAGCGACCGCGATGCACGCCGCTGCTGAATTTTTAACCAATGGAGGTGAAGTCATTATACGCATGCGCGGACTGCCGTTTGACGCTACAGTTCAAGATATCACGGATTTCTTCGGTGAAAAACCTCAAGTTTTGCATGGGGAGGAGGGTGTCATGCTTATATCTTACCCTGACGGCTCCTCAACAGGTGATGCATTTGTGCTATTTGAAACGGAGTCAGAGGGTCAGTTGGCGCTTAAAAAGCACCGGCAAAACATCGGTAAAAGATATGTGGAGTTGTTCAGAAGCACCAGAGCGGAGCTGCAACAGGTGCTTACCATGTATAATATTGGCTACCAATTAATCGTGCCACATCCGGGCCAATCGCCGTTCCCAGTTATCAGCGACAGGGCGCTTATAAATCAACGTCTTCAGGCTCTAATGAACATGTCTTGTTTGCGCATGCGTGGATTACCGTTTTCTGCATCTCACAAAGACATCATCAATTTCCTAGGCAGCTACAGCGACCATATCGTCGGCACCGTGCATGTTATATTCAACCTGCAGGGCCGCCCTTCTGGAGAGGCGTTTGTGCAGTTGCAAACGCCCGATCAGGCTCATCAATGTTCAAACGAGCGTCACTTGAAGCACATGGGGGAGCGGTACATAGAGGTGTTCCAGTGCTCTGTGCAAGACATGACGTGGATGTTGGCGACCAGTCACGCTAACCAACTCGCTTCCCAACAAATGAATCAAATCAACAACCCTCCCACCTTTCACACGCAGAAGAACGCTTCTTTTCACACCCCTTCCCCAACCACATTGCACACACCTTCGCCACCGCCCCCTCCCCCGTTAATCCACACCACATCTACGCCCAGTATGATAACGCCACCGCCAATCACATCGAACGGATTGTTGACACCAGTTTCACCCATCCCCATTTACACGGGGCAGTTTCCGCCCATGATTTCCCCCATGCCTGCCGGTTTCATCCCACCTCCACACATGCAACCCGCGCAGGGTATCCCTCCCCCAATAATGTTCAATCAAGAGCCCGTGCCATTCCATCTGAATCAATTTGGAAAACCCAACGGTGTGGCGTACATTACATTTGCACCACCCGAAGACCACCCGCGCTTCTTCCAtcaccaccaccaccaacCGCACGACAAGTACCACAAACACGGCATCGGCAGCAGATATGTCGAAATGTTTTACGCGCACTAA

Transcript

ENSQNNT00000004465

CAATGATTATAACGAGCGAGATCGCAACGCAGCCTGATGTTTTCTTAATATGGTATGCTACTGCTTCTGGGGAGAATGACGAAATGCTTGGGGCAGATGAATCTCCGATTGTCTGCATCAATTGGGTGGCCGTGGAAGTTGTTGACAACAAGATCATGCGCGAAGGAACCATTTTCGTTCGTGAAGAAAATGACGAAGAAGAGGACGATGAAAAATCACGTGTTACTTTAAAAGAAGCAACCAAACAGATTGAGGAGTTGGTGTCTGATCTTTCCGGTTGCTCCCGTACCGTTCGTCTTGTCACCGAGAACGGCTTGCACCTGCGCCAATGTCTCGTCCCCAGGGCGTTCCAACTGGACATCAAAGTGCCGgagttttttcttaaatacaTCGACATCAGAAAAGAGTACAGATTTTTCACTGGCAAAATGAACAGCTTCAAGAACCTTCAGGAGATCGCTGGAGATATGGGCATAGAAGAGCAGGGTCTGCTTGCAGTGGGCGAAGATAAATGCCGATTTTGCGCTCGAGTGACTCAATATCTTTTGAAGGAAGGACATAAGTTCGGCAAAGTTGAAAGCATCGGAGTGACGCTAAACGATGGTATTCCCACGGGATACGTAAAAGACGACACGATTGCGAGGGCAAGAGGTCTACCGTGGCAGGTTTCGGACGTGGATGTGGCGGAGTTTTTTACTGGGCTCAATATTGCAAAGGGCGGAGTTGCATTGTGTTTGAATATAAAGGGCAGGCGTAATGGTGAAGCTTTAGTGAGATTCGAGACGACTGAACACAGAGATATGGCGTTAAAGAGACACAAACACCACCTGTTGGGACGATACATAGAGGTCTATAAAGGAACAGCTCAAGAGTTTTTGAAAATAGCCAAAGGACCAGCGACCGCGATGCACGCCGCTGCTGAATTTTTAACCAATGGAGGTGAAGTCATTATACGCATGCGCGGACTGCCGTTTGACGCTACAGTTCAAGATATCACGGATTTCTTCGGTGAAAAACCTCAAGTTTTGCATGGGGAGGAGGGTGTCATGCTTATATCTTACCCTGACGGCTCCTCAACAGGTGATGCATTTGTGCTATTTGAAACGGAGTCAGAGGGTCAGTTGGCGCTTAAAAAGCACCGGCAAAACATCGGTAAAAGATATGTGGAGTTGTTCAGAAGCACCAGAGCGGAGCTGCAACAGGTGCTTACCATGTATAATATTGGCTACCAATTAATCGTGCCACATCCGGGCCAATCGCCGTTCCCAGTTATCAGCGACAGGGCGCTTATAAATCAACGTCTTCAGGCTCTAATGAACATGTCTTGTTTGCGCATGCGTGGATTACCGTTTTCTGCATCTCACAAAGACATCATCAATTTCCTAGGCAGCTACAGCGACCATATCGTCGGCACCGTGCATGTTATATTCAACCTGCAGGGCCGCCCTTCTGGAGAGGCGTTTGTGCAGTTGCAAACGCCCGATCAGGCTCATCAATGTTCAAACGAGCGTCACTTGAAGCACATGGGGGAGCGGTACATAGAGGTGTTCCAGTGCTCTGTGCAAGACATGACGTGGATGTTGGCGACCAGTCACGCTAACCAACTCGCTTCCCAACAAATGAATCAAATCAACAACCCTCCCACCTTTCACACGCAGAAGAACGCTTCTTTTCACACCCCTTCCCCAACCACATTGCACACACCTTCGCCACCGCCCCCTCCCCCGTTAATCCACACCACATCTACGCCCAGTATGATAACGCCACCGCCAATCACATCGAACGGATTGTTGACACCAGTTTCACCCATCCCCATTTACACGGGGCAGTTTCCGCCCATGATTTCCCCCATGCCTGCCGGTTTCATCCCACCTCCACACATGCAACCCGCGCAGGGTATCCCTCCCCCAATAATGTTCAATCAAGAGCCCGTGCCATTCCATCTGAATCAATTTGGAAAACCCAACGGTGTGGCGTACATTACATTTGCACCACCCGAAGACCACCCGCGCTTCTTCCAtcaccaccaccaccaacCGCACGACAAGTACCACAAACACGGCATCGGCAGCAGATATGTCGAAATGTTTTACGCGCACTAACGAAAatcgaaaatgttttctttaactTTATCATATCCCAACAATGCACCAGTGTTAATACGCCACCCTCCGTTCATAGATGAAGGCAGATGGGACAAGAACACCCTTTTAACGTTATATAGTTGCCCGAGAATCCCTGGAAAGTAgctatttttataaaacaaaacattactATTTTATGAGCCGAGCAACGTCACTTTTGATAGCTTTCCCTTTGTTTTCAAAGTACTTCCATCTTAcatattctttattttgcaATTGAACTTCTCATGAGCGTACGTGCATTTAATGTTGCTGCTATAGTTAATGTTGGCAACGAATATTTGTTGAGTTACCTACCTCTCTTATATTGCTTACGATGTATGCGAAttgtaaatttagttttaaaagCGTTTTACAAGAAAGTTTaacagaacaaaaacaatgttatttaaaaaaggaaa

Protein

Uniprot

Uniprot term	Description
Q6DEZ7	Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis OX=8364 GN=esrp1 PE=2 SV=1
Q7ZY29	Epithelial splicing regulatory protein 1 OS=Xenopus laevis OX=8355 GN=esrp1 PE=2 SV=1
Q3US41	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14947	ESRP1_2; epithelial splicing regulatory protein 1/2	-	Spliceosome	ko03041	deepkoala