Gene detail

Detailed information of ENSQNNP00000004474.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_002162726.2, double-strand-break repair protein rad21 homolog [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000004651

AAGATTAAGTAAAGCCCATGTTTTCCAAACAGATTTACAATCCTCTATAGAGAGTATTATTGCCCCCAAAGTGAAAATCGCTCTTCGAACTTCGGGACATTTACTGCTGGGTGTTGTGCGCATATATTCACGCAAAGCGAAATATTTATTGGCAGACTGCACAGAAGCTatgataaagataaaaatgtCATTTCGTCCTGAAGCTGTTGATCTCCCCATTGACAATCAAAATGCGGTAATATCGACCATCACAATGCACAACGAGTTTCAAGAGTGGGAAGCAATGGCCGCAAATCTTGGGAACGCGGATTTTACCATAGGTATAAACAACAATCAATGTCGTGTTGAAGATATAACAATGAAAGAGGATTTCACAAATAGCGgATATCGGAATGAAGATAATTTCTTCGGTGACACTTTCTTTGGTGAAACGGGTGAGGTAATTAGGGAAGTGGCAAGTGTAAACAACACCATTCAATCGGCAGATCTCGTAGACGCCGAGGTGACGTTGAAAGATACAACTTTGCTTGTAAACCACTCCGTGCAAGATAACGCAATGCCAGATCCGTTGTACGATTGTGGCTTTGGGGCTGGTGAGGGACTGGATTTTTTAGAAGGTTTTGACACGAACAATGAACAGTTGCCTGAGCAGGTTGTTCCGGGTGTGGAGGATGGTGTTACGCAAGCCGTGCTTGATGATGATACTACCATCGAAGCAAAAGATAATATAGAGGAAAAGATGGAAGTTGATAAAGAAGTTGAAGTTGAGCAGCAGACAGAAGCGCCTACAGGAGTAACAGGCCTAACAACCGCTGGTGTTGAAACCACACTGTTTACCAGGGACAGCGAGGCGCTGGCATTGGATCCAATTGAAGAGACGATTGTCGGCAAAGATAAACGACGGAAGAGGAAATGTCGGCTGCTTGTTGACGACGAAAAGTTCATTAGTAATGCCAAGATGAAATCACAGTTAGCGAATTACAACGATTTACTCAAGAAAGCTACAGTCGCTCCAAGGAACAAGAAAAGAATGCTGATGATGGAGAAATCAGTGAAATACCTTTACAGCCATCCCGCGTTTTCGGAATTCTCTCCCGCGCTCATGAATCGGTTCAGGAACAACTTAACAACAAAAGTTCCCGATGACCTTGTGCTGACCGGCTCGCAAGAAGAAGACGAAGTGGTGTTGGAGGAAGTACCCGGCGAGATTTTGCGTAATGCCGATACGGTGACGATACCAACCGAGTTGTCTAATGATATAGGTGCAAGTGCTATTGTCGACAAAACGTTAGCGGAAATCGAGAACGACTTACCTCCTGTTGCGCAGGACTTTGCTACCATAACGCAGGGTGTCGATGACGAGTTTTTAGTAGAGGAAGATGTCACCATTCCGCCGCCGTTCATGAAGGAGCCGTCGTTTGAAAACGACGTTACGCTTAACAACGACGTCGCCGCGAATAACGGCGTCAATCCGGACGAGTTGTCGCAATGGAGTAAGCGAGTGCGACAGACCATGCGCGCGATCGAAAGCGGACTGAAAAAAGAGCGGCCGGTGAATTTCAAAGCGCTCACGAGAAACTATAACCGCAAACAGGCGGCGTTAAGGTTCTACTCCTTGCTCATGTTGAGTAAAGAGAAAGCCGTCAGTGTACGCCAGGATGGGATCTTCCAAAACATTTACGTCGATGAAGGCGAACATTTTGCCCAGTACACTTAATAGAAGGAGAATGTTGTTGAAATGGTCATGTTGAAAAACCTTCCAACATGCCGTGTAAATTCGTAACGAAATATTCCAAAATGAGATTTCTTTAATTATGATTAAgttattcttcttttttcgaAGCTGTACTttcgttttcgatttttcgTTTGTTTTTCCATCAAGAAAATGGAGCTAGCGGGAAAATTTTTAAGAGAGACGCTTCTTTCTTCACagttataatatatttttattggtcTGCGTTGATACATGTGTTAAGAAACGAGAGTTCATTTCCAGTTGTTCCATTTTCCATTACCCTTGGTTGGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93310	Double-strand-break repair protein rad21 homolog OS=Xenopus laevis OX=8355 GN=rad21 PE=1 SV=1
Q3SWX9	Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1
O60216	Double-strand-break repair protein rad21 homolog OS=Homo sapiens OX=9606 GN=RAD21 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04824 all species →	Rad21_Rec8	Conserved region of Rad21 / Rec8 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006909 all species →	Domain	Rad21/Rec8-like protein, C-terminal, eukaryotic	Interproscan
IPR039781 all species →	Family	Rad21/Rec8-like protein	Interproscan
IPR023093 all species →	Homologous_superfamily	ScpA-like, C-terminal	Interproscan
IPR049589 all species →	Domain	NXP-1, middle HEAT-repeat binding domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12585 all species →	SCC1 / RAD21 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0007062 all species →	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278 all species →	Cellular Component	cohesin complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000004474.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.