Gene detail

Detailed information of ENSQNNP00000005578.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_002154975.2, excitatory amino acid transporter 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000005792

AAGAATTTCCTTAAGAGGTCATTCATGTTGTCTGACCAATTCTGAAATAGCTTTACTGTAACAGCTTTATAACGCAATTACTTGGGAAAGGTTTGAATGAATTATGCTGACACTAGATCAACCGATGACAATTATCGCTTGCCAATCATTTCGTCATGGTATGCGTGGAAATATTCGccatcataaaaaataaatcaatttcAAGAACCATCGATTCAGGAACCATCAAATACGGAAACCAGTGTTCATTTTTTGTAAAGTAATACGAGTAAACAAGAAGCAGAACCTGCAGAGCAATCATGCCTTCCGACCATCGTTTATTAAACGCCGGCGAAACGATAATGTTAAACGAACCCAGTCCCCCGGGAAGTATTTGCAAGGACATGCCGAGTAGCGAAACGTATGAAGAAGAACAGAAATGGTATGTTAAAGTGTGGAGAAGAGACAAGTTGATGATACTCATAATCATCGGGGTTGCTTTGGGATTTTTGGTTGGTTTAACCTGCAACACCTCCATTCAAAAACTTGAGGAACCAACGAAATCGACTGTGCTGTTATTTCTCGGTTTTCCAGGTGAAATTCTCATGCGCATGTTGAAAATGTTGATTCTCCCTTTGATCGTATCCAGTCTTATTGTTGGCCTTGCTGACCTTGACCAAAAATCTTCCGGACGTTTGGGCAGGCGAGCGGTGCTGTATTACTTTGGCACAACCATGATAGCTGTAATATTGGGGATCATTTTGGTTGCTTCTATTCAACCTGGTTCTGGAGTGGcgaaatctgaaaaaaaaactgaCAAGGAAGTGAGAGCGGTGGATTCTTTCTTGGATTTAATCCGAAACATGTTTCCCGACAACCTAGTGAAAGCGACCATTTACCAGCTCACAACCGAAGTGGACACACTGAAAATCAACGTTAAAAATCACACGGTGAATTTCACGTTGCCGAAGAACGAGACGGATTTGTTGCGGAAGAGGCACGAGTTCAAAACGGCGCTCATAAACGGAACAAATGTCACCTACTACCAAACATGGAAGGAGGTCAAGGTGGCTGGTTTGCCTCTTTACGGTGGTGGAACGAACATCTTAGGTCTGGTTACTTTCTCAATCGCTATGGGAATCATACTCGGTAACATGGGAAATAAGGCCATCACATTTATTACGTGGACATCCACATTGAACGAGGTCGTTATGCAACTTGTTTCCATGGTGATGTGGTATTCACCCATTGGTATATGGAGCTTAATTGCTGCCAAGTTCGCCGAAATGGATGACATCGGTGATACCTTCGCTAGTTTGGGAATGTACATGGTGACTGTTATTGCAGGTCTTCTTATTCACTCCTTCATCGTACTTCCCTCTATTTATCTGATATTCACGCGAAAGAATCCACTCAGATATGTTAAAGGTATCGTCCAGGCTTTGTTGACAGCGTTCGGAACAAGCTCCAGCAGTGCAACGTTGCCTGTCACATTCCGATGTCTCGaggaaacaaacaaagttgatAAAAGGGTCACGAGATTTGTGCTTCCTGTAGGCGCCACTATCAACATGGATGGGACGGCCCTTTATGAAGCAGTGGCCGCCATTTTCATCGCTCAAGCGGCAGGTATGAATTTGAGCTTCGGTCAGTACATTGCGGTGAGCCTCACATCCACAATGGCCTCGATTGGAGCGGCAGGCATACCGCAAGCCGGTCTCGTTACCATGATGATCGTCCTGCAAACACTTGGCTTGCCTGAAGATGCGGTCACTTTGATTTTTGCCGTCGATTGGTTCTTAGATAGAATCCGAACAACGGTCAATGTACTGGGCGATGCTTTCGGTGCCGGCATAGTTGCACATCTTTCGCGCGAAGATTTGCGAGAATTGGACATGCAAGCTGAACAGAACGCTATGGCGCGTGATATGCTCAAATCAAAACAACCACCGACACACGTCAGCATGTATGACGGATTGACGGCCTTGTGAAGAGATACGTCGTCAGTCTAACGTCAACCTCCCCCCCTAAAGAAAACTAAGTTCAATTATTTTACAACGCTTCAGCATTTTTAGgttctaatttttttaaggGCAGTCAGCTTACAGAGGGAAGAGTGACTAGAAACAACAAGATTCCCCCTCAAGCTTGACTATTTACGATACATTGACTATTTTCCAATATTTGTAGAATTATTTGTATGCTTAAGCTCTGTGTGTGTATTTAcgtgtacatatatatatacccgATGTACAAAGTGTAACAAACAATGTAAATATTGGTTAGATGAGATTCTTCTGTGCTAGCCAATTGTTTGCTT

Protein

Uniprot

Uniprot term	Description
O57321	Excitatory amino acid transporter 1 OS=Ambystoma tigrinum OX=8305 GN=SLC1A3 PE=1 SV=1
P51907	Excitatory amino acid transporter 3 OS=Rattus norvegicus OX=10116 GN=Slc1a1 PE=1 SV=1
P31597	Excitatory amino acid transporter 3 OS=Oryctolagus cuniculus OX=9986 GN=SLC1A1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018107	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR050746	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005313	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015501	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05613	SLC1A2, EAAT2; solute carrier family 1 (glial high affinity glutamate transporter), member 2	-	Transporters	ko02000	deepkoala