Gene detail

Detailed information of ENSQNNP00000006995.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047123187.1, pre-mRNA-splicing factor CWC22 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000007257

GTTGTAAAGAAAACATTCGCACATAGCAAACATTGCCATTACACTACACTACACTACACTTGGAAAAGggaaattcaaataaaagatGAAAAGTGTTATAAagTGCACAGAAACTGCTGATATTGGGCCTTTCAACACCAGAGTTGAGAAAGTAAAGAGCTCACACTGTGACAAAGACAATGATGATAGTGACAGTGGTTACGAACGAGAAGAAAGAAAGCGTAAAAGGAGATTATGTTCGTGTGGTGAAGATGAACCTAGAtctaaatcatcaaaataCAAAGgTGGCGCATATATTCCACCCTCAAAATTAAGAGCACTTCAAGAGGGGATTACAGACAAGTCAAGCGTGGCTTACCAGCGTATGGCTTGGGAAGCCctaaaaaaatctataaatgGACTTGTGAATAAGGTCAACACATCTAATATCAAACAAATAGTAGTGGAACTTCTACAAGAGAACATTGTCAGAGGAAGAGGTTTACTGTCGCAATCCATTATCAGAGCACAAGGAGCATCTCCtacattttcaaatgtttttgcttctTTGGTGTTCGTCATTAACACTAAGTTTCCTAAAATTGGGAAGTTGATTTTGCGAAGACTGATAGCTCAGTTCCGTCgatcatttaaaagaaatgacAAGGCTGTTTCCATTAATTCTGCAAAATTTATTGCACATTTGGTCAACCGACAAGTTGCAAACAAGTTGTTGTCTTTGGAAATCCTGATGTTGCTTTTACAAAATCCAACAACAGACAGTGTGGAAGTTGCTGTAAGTTTTTTGAAAGAGGTTGGCATCAAACTGCAAGAAGTTTCCCCAAGAGGAATAAACGCTATATTTGAAAACCTTCACAATATCTTGCACACGTCCAGTATTGACAAGCGTATCCAGTACATGATCGAAGTCATGTTTGCAGTGCGAAAAGATGGATTCAAGGATTATCAAGTGACTGATGAAGAGTTGGATTTGGTGGAGGAGAACGATCATATAACTCATCTTCTAAGGCTGGATGATGCTGGCAACACAGAAGATGCTCTAAatgttTTTAAGCATGACCCTGATTTCACGGAGAATGAAGAGAAATATAAACAGATACGAACAAATATCGTGGGTAGCGGCAGTGATGATGACTCTGATGATGGCGATGATGATGGTAACGAgacagatgatgatgatgatgacgaggaAAACGAAGAAGAAACTGCAGAACCTTCTCTGATTATCGATAAGACAGAGACAAATTTAGTTGCACTCAGAAGGTTGATCTATCTTGCTATACAATTGAGTCTTGATTTTGAAGAATGTGCCCacaaaatgatgaaaatggaGATTAAGCCTGGACAAGAGCACGAGTTTTGCTTGATGGTCGTTGAATGCTGTGCCCAGCAGAGATCTTATGAAAAGTTTTTTGGACTGTTAGGCCAGaggttttgtttgttgaagaAAGAATTCATGGATAATTACATCGTTATATTCAAAGAACAGTATGACACGTGTCACCACTTGGAAATCAACAAGTTGCGTAACACCGCAAAGTTCTTTGCACATCTTCTGCATAGTGATGCAATACCATGGGCAGTATTGGAATCAATAAAGCTTAATGTAGACGAAACAACCATTTTCAGTCGTATCTTCATCAAGATTTTGTTCCAGGAGTTAGCAGAATACCTGGGCATTCAGAAACTCAACGCTAGACTCAAAGACGTGATTATGGCCCCGCATTTGGAAGGAGTCTTCCCACATGACAACCCACGTGATATACGTTTCTCGATCAATTTCTTTACTGCAATAGGGCTGGGAGCATTAACTGATGAGTTGCGCGAACATGTTATAAAGATATCCAAAGCCAGTCTACTCGCCCAGCAGATCGCTCTAGCCGAAAGCGACTTTTCTTCGGACAGTAGTTCTTCTGATTCTTCTGAGGACCAATTGTAAGATCTTTCAAACGAACTATCGTTTGGCCTTTGCTAGTGCCACTATCTACAACGACTAGATTGCTGGGCGTAAATGGGTAGATGGCCATGACAATGATATCAGTATCACCAGAAGGCGAGCGTATAACTGTGTTTAACCCAGACGATACAGAGTGTTGAACATGAACCATCAGGCGAAAGTCGGCTTCACGAGTAGAGGCTAATGCACTCGTATCGTTAACTATTTCATGAGACAGCTCTACGCACCAATCTTCTTTTGGCAAATAAACCTGTTTGGACTTTAAAATGCTTGaaacttttaatttgtttttaacacgCATTCAAAAATAAGATCAATCA

Protein

Uniprot

Uniprot term	Description
Q9HCG8	Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens OX=9606 GN=CWC22 PE=1 SV=3
Q5RA93	Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii OX=9601 GN=CWC22 PE=2 SV=1
Q8C5N3	Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus OX=10090 GN=Cwc22 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847	MA3	MA3 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050781	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13100	CWC22; pre-mRNA-splicing factor CWC22	-	Spliceosome	ko03041	deepkoala