Genomic Location: chr3:15408109...15420448
NR annotation: XP_004209346.2, uncharacterized protein LOC100214827 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000010415 |
| Transcript |
| ENSQNNT00000010415 |
| Protein |
| ENSQNNP00000010060.1 |
| UniProt accession | Description |
|---|---|
| Q5E951 | Tubulin-folding cofactor B OS=Bos taurus OX=9913 GN=TBCB PE=2 SV=1 |
| Q99426 | Tubulin-folding cofactor B OS=Homo sapiens OX=9606 GN=TBCB PE=1 SV=2 |
| Q9D1E6 | Tubulin-folding cofactor B OS=Mus musculus OX=10090 GN=Tbcb PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005647 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14560 all species → | Ubiquitin_2 | Ubiquitin-like domain | Domain | Interproscan |
| PF01302 all species → | CAP_GLY | CAP-Gly domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000938 all species → | Domain | CAP Gly-rich domain | Interproscan |
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR045172 all species → | Domain | Tubulin-folding cofactor B, ubiquitin-like domain | Interproscan |
| IPR036859 all species → | Homologous_superfamily | CAP Gly-rich domain superfamily | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18916 all species → | DYNACTIN 1-RELATED MICROTUBULE-BINDING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0031122 all species → | Biological Process | cytoplasmic microtubule organization | Interproscan |
| GO:0035371 all species → | Cellular Component | microtubule plus-end | Interproscan |
| GO:0051010 all species → | Molecular Function | microtubule plus-end binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0007021 all species → | Biological Process | tubulin complex assembly | Interproscan |
| GO:0007023 all species → | Biological Process | post-chaperonin tubulin folding pathway | Interproscan |
| GO:0043014 all species → | Molecular Function | alpha-tubulin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17262 | TBCB, CKAP1, ALF1; tubulin-specific chaperone B | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
