Gene detail

Detailed information of ENSQNNP00000010872.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047133145.1, RNA-binding protein 4.1-like isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000011250

CGAAGAACACTAAGTACGAAGTTTCATATCTATCCGtggtcatttttaaaaaacattcttaCATGACTCTTTTTGGAACACAATAATTACTAAACAAGTAAACTTGTAATTTGGAGAATGACTAATATAAATGAAAAGACTGTAAAATTATACATTGGTGGTATCGATCCTGAGTGGTCTAGTGAAAAGGTTTTGAAGCTTTTATCCAAACATGGCAAGGTTATTCGTGCTGATGTTGTAAAAAATTATGCATTTGTTTTTGTTGAGGACAATGTGTCGGCTGATAGCATTATAAAGAACGTCAGTGGTACAACTGTGGACGGATCAAAGATCGTTATTCagATATCCAAGAACAAACAGAATTTAGTAAATGGAGATGACGTCTGTTTTGAATGTGGGAAAGGTGGCCATTGgGCAAAAGATTGCTCTCAAAGACGTGCCAGACTCGAATCTAAAAACGGCATGCCAATGCAGAGAGGTCCGTATGGGCAGGGAGCAGTGAGAAAACCGGAGCGATTTATGGAGCGTCCACGCCAATATGAGCGTGAGCCGTACACAAGGAATCCTTATACGAGAGATGGATATTTCAGCGATCCGTACGCCCGCAGGCCCTATACGCGGGAGCTGGTGCAGCATGAACCATATATACAAGAGCCACCACAGAATGTTTACCATAGAGAAGTGTATACGCATGAGCCATACGAACACAACATGGTGTATCAGCGTGAGGCGTACAGGGAACCTTATGCGAGAAATATGACTTATACTCGAGAGATATACTCACCAGGTTATGAATATGAAAGCAGATATGCTGCACCCATTGCCAGACCAAGAAGTCCTTTATCTAGGCCCGTGTACGCTACTCGTGACCCTGCTCATTACTCGTACTCCGGAGGGCCGTATGATACTGCTCCAGCAAGTTACAGAGCGCCTGTAGAATATCAAAGACACGTTGCTCCTGCAATGGCCAATCCACCAGCACGAAGGTACGCGGAACAAGAGCACCTCCATCCCGTAGACTATTGATTTTAACGTGCGGACTGCGTGTAGACGTTGTATTATAACCAAACGTTCGTCGAACTTTTCGAGGTTTTTTTAGATCTAGAGACTTTTTACTCACGTTGTATTTCTCGCACTTtcgtttataaattttttatccggttttttgttttttcaaacaaaaatctaCTTTCATGTAAAAAGTATGTGAATTTCACCAATGTGCGGTGACGGGTCGTAACACTGAATATGGGTTGTGGTGAATATCGTACTTCGTAGCAGAAACGAAAATTCTGTGCATGTTCTTTCCAGTAAACATTTCacgttgtttttgttctgttgATGTTAAAACGTGAAGACATTATTTGAAAGTTTGTTGATTTATGTGATTTCGCTGGATTTATCTACTGCTGCTCATAAAATCGCGATATGCGGTGTATATATGTGGCAGTCCACAGTTCTCAAcgataaaaatcaaaaatctaaTACATGTTGGTGATTCTCTTTAAATCTTACCGGGAACACTGCATATCGCGATTTTGTTATTGTAAACTGTATCCATTAGAATTATAAAACGCGaacatgattttaaaaatgggtTTAAATTGACAgctttacaaaacaaaagtcGCTTTTTCTGTATATCGTAATGTTGACGTACAACGTCGTTGATGTCTAAGGATACGGCAACCATTTAATACAGAAGAGCgattcttattgttttcaagattgttgtttatttgattTGTTTCAGAAATTATCAATCATTAATGATTACTACTCACTGATTGGGTGATTACTTCTCACTGATTGGGTGATTACTACTCACTGATTGGATGATTACTACTCACTGATTGGGTGATTACTACTCACTGATTGGATGATTACTACTCGCTGATTGGATGATTACTACTCACTGATTGGGTGATTACTACTCACTGATTGGATGATTACTACTCACTGATTGGGTGATTACTCACTGATTGGGTGATTACTACTCACTGATTAATGATTACTACTCACTGA

Protein

Uniprot

Uniprot term	Description
Q10667	RNA-binding protein rnp-1 OS=Caenorhabditis elegans OX=6239 GN=rnp-1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48031	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13187	RBM4; RNA-binding protein 4	-	Spliceosome	ko03041	deepkoala