Gene detail

Detailed information of ENSQNNP00000011726.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_012555897.2, cyclic AMP-dependent transcription factor ATF-6 beta isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000012154

GTTAGTTCAAGTTTTAAGGTTGGAGCAACGCTCAGACTTTAATTaactttacttttttgtttggctttaaaagCCAATAATGACGGCGTGATTTTCTTTCGTTTTCGTTATCGTCGTCAACAACTGTTGGTCCTATTCTGTTATCAATTGGAATTATCTTCATAGAATGCTTGCTTCATCATCACATGggttatttttttcaaattcagAGCAAAGGTTTTGCCAGGACAATTTACTTGATGCGGATGACTGGGgtaACGAAACTATTGCACAAGTAAGCGACGATAGTAACAGCCCGTTATCATCTTTATCAAGTAATTCTAATACGttCGAAGACCTGCTATCTGTTGGATTCACACATCACTATGACGATAGTTGGTTAGTCAACAAAGAAAAGAATGATACATGTGGTGTGCCCAAAGCAACAGAagattttgtttgtgaaaaatCTCAATTGGCAGTTCAATCAAAGCCCTTGTCAAATAACGTACACAGGAGCAAACCAAGCTGGCAGATCAAACCCGAGATTAAAATTGCAGTCACCAAACCAAAAGTTGTTAAACTTGatAACGGGCAGTTCTATGTTGAGCGCACTCTACCGAATACATGCAGCCAAGAGTTGAAAAACTACAAACGTCAGCAACGTTTGATTAAAAACAGAGAATCCGCAAATTTATCTCGGCAACGCAAGAAACAGCATATCAAGACTCTTGAATCGCACGTGACAACGGTAACCAAGATCAATCAGCAACTCCAACAAGAGAATGAGGATCTTAAAAAACACATCCAAGCACTGGAAGATGAAAATTGTAAACTGAGACAGAAGTGTTTTCCGACTGTTGGCACGAAAAGATCTACTGCGTTTCTTGCTGCTCTTTTGCTGTTCATATTTAATCCATTCAATTCATCCCCGCCCATCATAACGCCCTCATCAATACGCCACAGTCGAACCCTTCTGCAATATGACACCAATCGGCATTTCAATGCCCCTAAGAACGAAAACAACTATCCATGTCAGCCAGATGAGATGTTTCTGCGCGCGACCAACGTCCAGAAGAGAGCCGAACAACTAGGGAGGGATTTCAAGGGCGGTGACAATTGCGGTGAACAGTTCAACAAAACTAAGTTAAGCAGATTGAACAAAGCATTAGAGGGCCTGGTACACAACCTGAAACCTGATAAAGAAACTCACATGAGAAAATCGAAGAGGTTTCGATCTTTGAAAACTGCTAAACGCTTACGGACCAAAACAAGCGACTCTGCGAAAGTGTTTGTAAAACCCCCCAACTGCAACGAAACTGTCTTGCCATCACGTAAAATCTCTTCGCCGccttatttcaaatttttgagAGGTCAAAAGAAATTCGAAAACTTCATGACCAAAGATAACAGTTCGGAGGGATTGGGAAACATTGTTGAGAAATCCATCAACCGTAAAGATGATACCTTCTATTTAGCCGCGCTCAAGGATTATATGGTTCTCCCGGCAAAGAATTACAGCTTAAGTCAACGTCCTAAAGTAGCCATTATGCTACCTGCGTATTTCCCTTACAATAGCACTTCATCAGGCCACAGGAGCGTGCCCATGTTGCAAATCGATTGTTTGGTCGTCGACACTAGAATAGTGGAGGTCGCTCGGAACTATTTGCTCAAAAACCTCGCAGAGCAGTTGAACACATAACGCATTAGttgctttaaaaaacactgtaaaaatatttcacgccaactttatttattctgGGCATGATTTTCTGGAGATTTTTTTGCGGattgttttgttaaataaacatGATACCacttatttaaataaaatatgtagTTTCTCTTTTTATACCGCTTTTTTAGGTTAAATATCTAGTTTCTCTTATTATACCGCTTATTTAGGTTAAATATCTAGTTTCTCTTATTATACCGCTTATTTAGATTAAATATCTAGTTTCTCTTATTATACCgcctttcaaaataaaatatctagTTTCTCCTATTAT

Protein

Uniprot

Gene family

Uniprot term	Description
O35451	Cyclic AMP-dependent transcription factor ATF-6 beta OS=Mus musculus OX=10090 GN=Atf6b PE=1 SV=1
F6VAN0	Cyclic AMP-dependent transcription factor ATF-6 alpha OS=Mus musculus OX=10090 GN=Atf6 PE=1 SV=2
P18850	Cyclic AMP-dependent transcription factor ATF-6 alpha OS=Homo sapiens OX=9606 GN=ATF6 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	TF_bZIP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827	Domain	Basic-leucine zipper domain	Interproscan
IPR046347	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR051882	Family	ATF bZIP Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46164	ATF6, ISOFORM C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09049	ATF6B, CREBL1; cyclic AMP-dependent transcription factor ATF-6 beta	-	Transcription factors	ko03000	deepkoala