Gene detail

Detailed information of ENSQNNP00000012083.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_002164622.2, LIM and senescent cell antigen-like-containing domain protein 1 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48059	LIM and senescent cell antigen-like-containing domain protein 1 OS=Homo sapiens OX=9606 GN=LIMS1 PE=1 SV=4
Q99JW4	LIM and senescent cell antigen-like-containing domain protein 1 OS=Mus musculus OX=10090 GN=Lims1 PE=1 SV=3
Q91XD2	LIM and senescent cell antigen-like-containing domain protein 2 OS=Mus musculus OX=10090 GN=Lims2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006852 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047946 all species →	Family	LIM and senescent cell antigen-like-containing domain protein 1/2-like	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR047944 all species →	Domain	LIMS1/2-like, LIM domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24210 all species →	LIM DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0045216 all species →	Biological Process	cell-cell junction organization	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:1900026 all species →	Biological Process	positive regulation of substrate adhesion-dependent cell spreading	Interproscan
GO:2001046 all species →	Biological Process	positive regulation of integrin-mediated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23354	LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.