Genomic Location: chr3:15261149...15267750
NR annotation: XP_002158891.1, T-complex protein 1 subunit delta [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000012563 |
| Transcript |
| ENSQNNT00000012563 |
| Protein |
| ENSQNNP00000012101.1 |
| UniProt accession | Description |
|---|---|
| Q9NB32 | T-complex protein 1 subunit delta OS=Ochlerotatus triseriatus OX=7162 PE=2 SV=1 |
| P53451 | T-complex protein 1 subunit delta OS=Takifugu rubripes OX=31033 GN=cct4 PE=2 SV=1 |
| Q7TPB1 | T-complex protein 1 subunit delta OS=Rattus norvegicus OX=10116 GN=Cct4 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001947 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00118 all species → | Cpn60_TCP1 | TCP-1/cpn60 chaperonin family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027410 all species → | Homologous_superfamily | TCP-1-like chaperonin intermediate domain superfamily | Interproscan |
| IPR012717 all species → | Family | T-complex protein 1, delta subunit | Interproscan |
| IPR002194 all species → | Conserved_site | Chaperonin TCP-1, conserved site | Interproscan |
| IPR017998 all species → | Family | Chaperone tailless complex polypeptide 1 (TCP-1) | Interproscan |
| IPR002423 all species → | Family | Chaperonin Cpn60/GroEL/TCP-1 family | Interproscan |
| IPR027413 all species → | Homologous_superfamily | GroEL-like equatorial domain superfamily | Interproscan |
| IPR053374 all species → | Family | TCP-1 chaperonin-containing T-complex | Interproscan |
| IPR027409 all species → | Homologous_superfamily | GroEL-like apical domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11353 all species → | CHAPERONIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0140662 all species → | Molecular Function | ATP-dependent protein folding chaperone | Interproscan |
| GO:0005832 all species → | Cellular Component | chaperonin-containing T-complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09496 | CCT4; T-complex protein 1 subunit delta | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
