Gene detail

Detailed information of ENSQNNP00000012355.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_047130122.1, leiomodin-3 isoform X2 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000012843

ACATTTGTGACGTAATCGGGAATGTCTTCGCTCGTTAAAGTGGATAAAAGCGGTGAAATATTGGCGTCTGCGTTAAGTTGATTGTCGCTCGATCGTATCTTTTACGATCTTGATTTAATGGGCAAATAAGAAAACACGTCAATGTCAATGTTGCGTCGGCATGCTTTTCCTATAAATCTCGTGTTTGTAAACTGTTGTAAACATTTTGCTTTGAACCGTAATATACTATACGAGACAAACTCGTAATTATTGATATCGGTGGAAGACGAACAGACGCCACGACATAACTGGACAAGAAGATGCCATACCAAGAATCAGTAAAAACTCCGTCGACTCGACTTATGTCGATGTCCGATGACGACGCCGACTTAGACACGACGTTATTGTTGCGATGTTTACAAGAAGACTCCGACGACGTGTTTTATTTGCGTATAAACAACGTCAAACTGGAGAAGGACGTCTTAAAGGCCATATTCGACGCGTTAAAAAAGACGGAAAAGATAAAGCATTTGTCTCTTGCTGGCGCCCATATGAACGATGAAATTGGTTTGTTGTTGAACGAAGCtgtgaaggaaaacaagacaCTCGAGACACTCAATCTGGAATCTAATGATCTCACTAACACTGTAATCGAGCCATTATGTGAGATTTTGGAGACGCATATTACAATGAGAGAATTGAAGTGTTCCCATCAGAAAAATGGACTGGGTAGTCGAGGTGAAGAGGCGATGGCTcgacttttaaacaaaaacgaaagatttttgaaagtCGCCTATCCTTTTAAAGTGCCTTCAGCAAGAAGTCTAGTGGATAGATGTCAAATACGCAATCAAGAAATCTtaCGTAAAAAACGAACCCAAGGCAAAGACTTTTATAACTACAAAAACGAGATAGATAAGCGAGACAAGTTTCCGCAACCTTGGATTAAAGTTCAAGATGAGAATCGTGACGAAAAGATGAGGTTTGTTTTGGGCGAGCAACGACGCAGCATGAAGAAGGTGTCGAAGGATTTCAACAAGATGCAGTACGAGTCGAAACAGCGCGCGAAAGAAAACGCAAAACCTGCAATGGATAACGAACTCGCGGCAAAACTCGCGTCAGCGAAAAAGAAGCATGGCAGGACCACGGTGCGTTAGCTACATAGACAATGGCAAGGAAACGGTCAATTGAATGGAATTAGTATATTTTGCACagtcaataaaataatattttataatatactTCTTTTGATAAATACCAGCTTGAGATTTGCTTTTAATATCTATAAcgaaaaatgattttctttattatgTTTTGTATAAATGTGAATGATTGGTATTTAGAAGGTAAAACAAGTTGTTCTGGAACTGCAGTGAAAGATAGGGCGCCAAAGAGGGTTATATTTAAGAGTCGTTTATAAAATTTCATAGTCTCCTTTTACAATGTATATACTGTAATGTTAGCAATTcgtttatatattaaaaaatagtaataaaataattaaacaaacaaaataaataaataataaataaacaaacaaaatatatatatatatagcgtaaaatggaaaatttttaaagtagTATTTAGTATATTAATTAATCGCGTAAGTTCATCGtctatttgtaaaatatcaaagaaatgccGACATTCTATCGTGAAATTACTGTTTTCCAATGTGTTTGGCAATCGattgtttttactttgtgaTAAAAGTCGTTTATTTTGTGtgtgaatattattattataggaTCATAGGAGCAACCAGGAAGATTTTCAAGTCTTAGCACAAACAGCTGGTTTCTTTCAAATTCGTTACCAAATTCATTATATGCTAGTACACCACTATCGTTGTTGCTATAGGTGAAACAATACCATACTGAAGAAGCCTTTGTAATTATGGTATTGTGTTCCAGTATTTTCAGGGCATTCTAATATGTTGCCCACCAATCACACCAATGACGTGACATATTCCATAGATCTTCAAAAccagaagaaatatttttttcaatggcTTTTAGATGTCTTTTTGCAAATTATAGGCGATACAAGAGCAAGTAGGTGATCAAACCTCTCTGGCGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VAK6	Leiomodin-3 OS=Homo sapiens OX=9606 GN=LMOD3 PE=1 SV=1
E9QA62	Leiomodin-3 OS=Mus musculus OX=10090 GN=Lmod3 PE=1 SV=1
Q9NYL9	Tropomodulin-3 OS=Homo sapiens OX=9606 GN=TMOD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002197 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSQNNP00000012355.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR004934 all species →	Family	Tropomodulin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901 all species →	TROPOMODULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005523 all species →	Molecular Function	tropomyosin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051694 all species →	Biological Process	pointed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000012355.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.