Gene detail

Detailed information of ENSQNNP00000012581.1 in Candelabrum cocksii

Genomic Location: chr7:3549111...3551282
NR annotation: XP_002159811.3, uncharacterized protein LOC100213694 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O42936	Pre-rRNA-processing protein las1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=las1 PE=1 SV=1
Q9Y4W2	Ribosomal biogenesis protein LAS1L OS=Homo sapiens OX=9606 GN=LAS1L PE=1 SV=2
A2BE28	Ribosomal biogenesis protein LAS1L OS=Mus musculus OX=10090 GN=Las1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008084 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04031 all species →	Las1	Las1-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007174 all species →	Family	Las1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15002 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0090730 all species →	Cellular Component	Las1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16912	LAS1; ribosomal biogenesis protein LAS1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.