Gene detail

Detailed information of ENSQNNP00000012947.1 in Candelabrum cocksii

Genomic Location: chr11:12856645...12865786
NR annotation: XP_047139479.1, proline-serine-threonine phosphatase-interacting protein 2 isoform X1 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQNNT00000013458

GCACCAGGTATTATCAAGTCTTTACACTTTCTTACCCAATACTTAATTAAAACTCATTGTGCGATGCAAACCTAGCTCAAATTCATTTGCTGAGCGATTTTTGTAGGCGTAAATTCCTGGACCAACCTTGGGATGAAAATACGTCCCCTTGGGAATTGGAAATGGAGACGACGAAGTAGAAGATGAAAGTGGAAATTAAagtattttgatgttttaacgtttttaacaTTGTTTAGTTAGAACAGAATGCTGGTATGAGGTGATAGCAACATGGTGCATACGTTCGCAGATCAGTTCTGGGACGCAGATTTCAATGGCACAGCTGGCTACGATGCTCTTATCACACGTTTGAAGGAAGGGAAGAAGTTTTGCGATGCATACACAGACTTCATGAGGAACAGAGCCAAACTTGAAGATGACTATGGGAAGAACTTAATACGCCTCGCTCAATCGACAGTTGCAACTGATGAAATTGGGACATTACGAGCATCGTGGGATGGCGTAAAAAAAGAGACGGAGCACATGGGAATTGTCCATTGCGATTTCTCAAGGAAATTGAACGATCTCACCGAGAGAATGCTGAAGTTCAGAGAGATACAGAAAAACGAGAGACTGAAGAGTGAcgagaaaatgaagaaattgcaGAAGGATAAAAAGGTTGCTCATGAAAACGTGATGAAGGCAAAAAAGACGTACGAGCAGCGGTGTCGTGAAGCGGATCAAAGTAAAGAAGCATACGATGCAAAAGCTAAAACTGCTTTCACCCCTAAAGAAGAGGAGAGGcTGAAGAAAAATCTCGCGAAGTCGAAAACATTGTCCGAAAACACAGACTCGGTGTACCAGAGCAGTGTTAAAGTGTTGGAAGATATCAGAGTCAAATGGCAAATGGAGATGGAAGACACCTGCCAACATTTTCAAACTCTTGAAGAGCAACGTATTCAGTACCTTCGCAATGAACTCTGGGTATTCACAAATCTGGGAGCGACTCTAGCAGTTGACATTGACGAGAAATACGAAGAATGCCGTCTGGTGCTGGAGAGATGTCACCTCGTTCAAGACATCCAGCTGTTCATTAGTACAAAAAGGACTGGATCCGAAAAACCTGCCAGCATCCGTTATGAGAATTACTACCACGGATCGCGTGACTCAAACTCTCTGCCGCGAACGCATGCGCGTCACCCTTCCACGCAGATGTTCAGTAATCCAGTTGTGAGCGAAGAGAGTGGCAAGTCTGTCGATGAAGGCAATTATTCGACTGTAAACGAAGATTTTCTTCTCGCGAAACACGCGCAGCGCGTTCGAGTGAATTTCGGGTACGTGGCACAAGGTTCGCAGGAACTATCGCTAAACATTGGTGACATCATTGAGGTTTTGCGCGTTGAAGACAACGAATGGGCGATTGGAACTTTGAACGGACGGAAAGGAGCATTCCCTCTAAGTTTCACCCAGCGTATTTGACTTTCAGTACACCCGGGGTTTCCATTCGTTgcgtatatttattttctgagaGGCGAAATGACGTCATCCagttaaaatttgatttctttgtattcttttaTAACACCCTTCATTTTataagtttttaataatttttgcattatttttttatatatttttgttacatATTTAGTTccatataaataattttgttacGTATTTTGTTGGAATATTTTAAGTGTGTTTTAAACTAATTACAGTTTTCTTTGCCTTGTTTTTCCGAAAGAGCCTGGAACGAAGTTGCTCAAGTAATATATGATAATTATGCGTAAACGTTTATTAATTAATCCTAATAGATTTTTTATGCTATCATTTGATATCAGATGTTTCGCCCGTCGTAATGTCAATGTAGCTGACAGTTATTCCGCGTAAAAGTACAGGAATTATGATTTCTCAACTTCTGCATGTATTTTAAACTGATTGAAAGATATTTCAGATCTGTAATGGGGCCAAATGTCAAAAAGAATTTCAAGAAAGAAATAACCGTGTAATCGGAcgcactttttaaaaaactcatAAACCCCTGCGCAAGCATTTAAATCGAAAATCGTATCAATGTGCTTTTCTATCGAATCTACCTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43586	Proline-serine-threonine phosphatase-interacting protein 1 OS=Homo sapiens OX=9606 GN=PSTPIP1 PE=1 SV=1
Q9H939	Proline-serine-threonine phosphatase-interacting protein 2 OS=Homo sapiens OX=9606 GN=PSTPIP2 PE=1 SV=4
Q99M15	Proline-serine-threonine phosphatase-interacting protein 2 OS=Mus musculus OX=10090 GN=Pstpip2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005758 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12804	PSTPIP1; proline-serine-threonine phosphatase interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →