Gene detail

Detailed information of ENSQNNP00000013212.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_047139738.1, AT-rich interactive domain-containing protein 3C isoform X4 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000013725

CATATGAGCACGGAAAATAACTTTGTCCCGACTTTTGCatgaaaagcaaagaaaaccGCGCACGTTTCACCGATTTTCCCCATCGAAATGCTTCAGTTCATTTATTTCGATGTAAATGAAGTTACATTTGTGATAGCGAAATAATTTACCAGAGTGTACTGTTTCACTATATGTATGAATTATTTACCGGCCCCTATACATTTGTCAAAAAGCAAAATTGATATCGTTcgtataaaaaagaaagttcgTCAGTAAGACAACGAAGTGAAATGCTGAAAAAGTTCGAACAattaaaaaaagCCTCATCAAAAATGTCTTCCACGCCGATATCTCCCACTCGAAATCACTCGATGGCCAGTCTGCGGCCGAACGGATCACTCGAAGAcctaaagaaagaagaagtcGTACACGATGCAGCGTCGCTACAGTCCTATCATATGTGGTTAAAAGAGAAGCAAATAGAATCGGAGGCGAAGAAAggaaaacatttaaaagacGAGGAAGAGGACAGCGGCGAAGAAACCTTTCGAGTGGACGCTGTTTTAGAAAGGGGTCCCTCGCCGCCAGAGTCTGAGAACTCAAATTCTTATGAGTGGTCGTACGAGGAACAGTTTAAACAGCTGTATGAAATCGATTCGGATCCTGAAAGGAAAACTTTTCTCGATGAATATTTTGAGTTTATGAAGAGCAAAGCCATGCCTGTTAGCCGCATACCCATCATGGCCAAACAGATTCTTGACTTGTACCAACTTTACAATCTTGTTGTCAAACACGGTGGACTGGTGCAgGTGATTCGGAACAAACAGTGGAGCAAGATCACTAAGGGACTCAACCTCCCTACTTCGATCACTAGTGCCGCCTTCACTCTGAGAACACAGTATTTAAAGTACCTATACTCGTACGAATGCACCATGCACAATTTCTCGACGCCGAAAGAACTACAGACCGCCATCGATAGCAACCGACGCGACAGGTTTTCAAACGTGTACTACACAGAACCGACCATGACGTCATCGACACGTGACGACCGTTTCGTTAGTTACGCGATGAACGGATGCGATTACCCTAGTAACCAGACCCGTCACCACATGCCGCACCCGGTGATGGCCTCCTCGCAAATGGACATGCGCTACGGTTTAAAACGGCACAGCGACTCGTTAAAGCCATACGACAAGTACATGGAGAGTCCAAAGGTCATCGTGCTCCAGGACGGCAACCCCACCATGGCGGACGGGCGGCAGGCAAAGGTGAGCCCTCCCCCTCCCCCATTCCACCCACGCTCCCGTTCCCCTAACGAGATGCGAACGCTGGCCGAGATCGAGGTCGCGCGTAGACGAGGCCACCACATGGGCTACCCGACCGGAAAGGACTGGGAAGGAGAGGCGCGTCACGTGATCGAGGAAGAAACTCGGCGAAGGTTGTTGGATGAAACAAGAAGTCGCTCTACTGTGTGCAAGGATAAAAGCTGCAATGGCTTCGACTGTCAGTTCCCGCGCCCAGACTTGCACCGTCACACGCGTCACGACAGCAGCATGTTAGCCGGTTGCCACTGCACCTACTGTAAAGAGTACAGGAGTAACTACTCCCCGATATCCAGACATCACATGGATGGTGCCAGCGCGAACAGCTACGACAGGATGTCACCACGGGCTGATAAATCAACTCCCTCCCCAAACTCcatgaaaataaaagaggGCGACGATGGAGAACTCACCACCCTAAAGATCAAGATGCCCGACTTGCGCAAGAGCGGTAATAACATCCAGATCTCCCTGGAAGTGGGCGGCGTGCTTTACGAGGGTGTGATGACCGCCCAAACACCGCTTGCGACGGTCACCAATGGCGTGAAGCACGAGGGAGCCAACGATGATGAGAAAGTTGGGATCTAATGATTCCACGAGCGAAAACTAACTtgacttgtaaatatataaatagatttttttgtctttggttttcttttgaaatttcCACGTGGGTCACCGATACTGCGGGTTTGTTctctatttcattttttcgattttttttgaagaaacTCCACTCATACTTTATTCTTATGAGGTTTTTTGAGAGCAGCAgctgttttaaataatttatttggaTGAGTAGGTTACACCaaggaaaaaaacatttaaaacgtCTCTTGTTTGTCTTCGCATATCGTCTTGAAAACGTGCACATTGTGTCTGAATGCAGGGCCGTGTCAGAGGGTGCACGGAATCGTCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NKF2	AT-rich interactive domain-containing protein 3C OS=Homo sapiens OX=9606 GN=ARID3C PE=1 SV=1
A6PWV5	AT-rich interactive domain-containing protein 3C OS=Mus musculus OX=10090 GN=Arid3c PE=2 SV=2
Q8MQH7	Protein dead ringer homolog OS=Strongylocentrotus purpuratus OX=7668 GN=dri PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002279 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR045147 all species →	Family	AT-rich interactive domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15348 all species →	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25856	ARID3; AT-rich interactive domain-containing protein 3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.