Detailed information of ENSQNNP00000013554.1 in Candelabrum cocksii

Genomic Location: chr15:536591...540904
NR annotation: XP_047146337.1, telomeric repeat-binding factor 2-interacting protein 1 isoform X1 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5EAN7Telomeric repeat-binding factor 2-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Terf2ip PE=1 SV=1
Q0VCT3Telomeric repeat-binding factor 2-interacting protein 1 OS=Bos taurus OX=9913 GN=TERF2IP PE=2 SV=1
Q91VL8Telomeric repeat-binding factor 2-interacting protein 1 OS=Mus musculus OX=10090 GN=Terf2ip PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003391 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08914
all species →		Myb_DNA-bind_2Rap1 Myb domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015010
all species →		DomainRap1 Myb domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR039595
all species →		FamilyTE2IP/Rap1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16466
all species →		TELOMERE REPEAT-BINDING FACTOR 2-INTERACTING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010833
all species →		Biological Processtelomere maintenance via telomere lengtheningInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070187
all species →		Cellular Componentshelterin complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSQNNP00000013554.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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