Genomic Location: chr11:9169530...9175083
NR annotation: XP_002157838.1, peptide methionine sulfoxide reductase MsrB [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000014403 |
| Transcript |
| ENSQNNT00000014403 |
| Protein |
| ENSQNNP00000013883.1 |
| UniProt accession | Description |
|---|---|
| Q46EH1 | Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina barkeri (strain Fusaro / DSM 804) OX=269797 GN=msrB PE=3 SV=1 |
| Q8BU85 | Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus OX=10090 GN=Msrb3 PE=1 SV=2 |
| Q8PWF5 | Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=msrB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001898 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01641 all species → | SelR | SelR domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028427 all species → | Family | Peptide methionine sulfoxide reductase MsrB | Interproscan |
| IPR011057 all species → | Homologous_superfamily | Mss4-like superfamily | Interproscan |
| IPR002579 all species → | Domain | Peptide methionine sulphoxide reductase MrsB domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10173 all species → | METHIONINE SULFOXIDE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006979 all species → | Biological Process | response to oxidative stress | Interproscan |
| GO:0016671 all species → | Molecular Function | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | Interproscan |
| GO:0030091 all species → | Biological Process | protein repair | Interproscan |
| GO:0033743 all species → | Molecular Function | peptide-methionine (R)-S-oxide reductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07305 | msrB; peptide-methionine (R)-S-oxide reductase | EC:1.8.4.12 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
