Gene detail

Detailed information of ENSQNNP00000014452.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_012555247.1, RNA-binding protein Musashi homolog 2 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000014979

CTTGACTTCTAAAGTACAACAAATAAATCTGGAATTTTTTTAATAGCGAAAATACAAGGGCACACCGATCCTAACTACGAACCACGTAGTGACTCTTTATCGTAAAGCTGAGGGGGGAAATAGGTGATAACGTTTAAATACTATGTTTCGTGAAATTTCATTATGATACCGGGTTACCCTATACCTTATTATCCACCACTTGGGAATCAGTTGCCTATGCAGATTTCAGACGATGCAGGaaaaatctttgttgGTGGTATCCCTGCAGAAACTACCAAagAGTCCCTTATGGATTATTTCCAACAGTTTGGGGATGTAACCGACTCAATCATTATGGTGGACAATGTGACAAGTCGTTCCAGGGGGTTTGGCTTTGTTACATTCGTTGATCCGAATACTGTCAACAAAGTTCTCTCTCATAGTCGGCACAGCATACATGGAAAAGTGATTGACGCAAAGAAGGCTGTGCCCAAGGGTCCGAATCAAGGGAATATTCTACGTGCTATGGGTATCACTTCAAATAGAGCTGACAGGAACCCAGAGTGTAAAGTTTTTGTTGGTGGTGTTGCTCAAGGTACAACAGAGTCGGATTTGGAGACACATTTCCAGGAGTTTGGAAAGgttttagaagtaaagataccaaaagatcaaaacacacAACGCGCGCGAGGGTTCTCTTTTGTGCTCTTTGAAAGTCGTGAATGTGTCATAAACGCTACAAAAGAACGTTACCAAAAAATAAACGGAAAACTTgTAGAGGTAAAAACGGTTCATTTGCAGACAATGAAAACACAGCTGGATGAACAAGAGGATTCACACATGCAAAGTCCTGTTTCACCTTACATGCAATTGGGGCAACGTTTGAATTACTACCAGACGTATCCTTCGAATTATCTCGGAATGGGTGGTATGAGCCCGCAAGGTTTCTACGAGCCTTCTTATGATCCCTCGCCTAGTGGAAGCACCTGTTCCGCAGCGTCCATTGGTTCAGCTGGGTATGGCAACTTAGCAACAAACAACAGCACTCCCCAGCGTGTTGACGAGTACGCATACATGGCATCTCTCTACCCCGCTATGAATGAACTATCAATCAGTCAACAATATGCTAGATTCAAACGTTACATCCCTCGTCAATTGAACACACCGTTGAGTTACTCTATGCAGCCGTCTAGTGGGGGGGAGAGCTACTCATCATCTGGGGTTGTCACGCCCACATCCGTAGCATACCACGGAGGCGAGATTCCAAACTACGTCAGTCCATCGAATGTCTACAACGCTCCAACGGTTGCCGCATATGTTCCCGGATCATCCTCGCAGTCTGCACCGTCGGTACCAGGATTCTCTCGCTAAGTTTCCGCTTTGCGTATGATTAGATAGGCCACTCTATTGATGAATCgaacgaaaacaaatattcccatttatttctttagctTGAAATAtagatattgttttcttttttgttgacCTTCAAGTTCTTAGTTATTTTTAGAGTTTCAGTGTCCATTCAATATTGTTCtctttacatatatatatgatacAAACACACCGATGTAGTCATCTCTAAAGTTGTTTCGTTTTAAAAGAGAACAACTGCTTTTTCCgggttttttcttccattagTCCTTTTTGCTTTTGTCTCtttttgttcaattttgtttgtttttagttacattttttaataacataAGATAcgctttttaatttatttacacTGTTAATAATAGAAtaattttttcagaaaaaattgCTTTGTTAATTATATAAGAAAGCTTAAATAGGAAAACAAGGGTTGTTGTTACCGcaagaattaaaaataaaaccaaaaaaacacGTTCCCTATGTTAAAAGgaagatacaaaaaaaaaaacagaacaaagttttaaaagaacaaagcagcccttgtttttttatacgaagtcaaactttatttattattagcCTGTGCTGGTCACTCCTTTTATCTGTACACTTTTATTTCTAGTTTAGATGGtggttaaatatatatatatatatattatacattatATAGTTGAGTCATATGATTAACTTTTCTCTCTCTTTTAAcacacttattattattatatatatatatataataagacAAAGTTTTCTAAGTA

Protein

Uniprot

Uniprot term	Description
P48809	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2
Q9VVE5	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3
G5EFS2	RNA-binding protein Musashi homolog 1 OS=Caenorhabditis elegans OX=6239 GN=msi-1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan