Genomic Location: chr11:3624757...3627083
NR annotation: XP_002168543.2, transcription initiation factor TFIID subunit 6 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000015061 |
| Transcript |
| ENSQNNT00000015061 |
| Protein |
| ENSQNNP00000014533.1 |
| UniProt accession | Description |
|---|---|
| P49848 | Transcription initiation factor TFIID subunit 6 OS=Homo sapiens OX=9606 GN=TAF6 PE=1 SV=1 |
| Q91857 | Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis OX=8355 GN=taf6 PE=2 SV=3 |
| Q62311 | Transcription initiation factor TFIID subunit 6 OS=Mus musculus OX=10090 GN=Taf6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006009 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07571 all species → | TAF6_C | TAF6 C-terminal HEAT repeat domain | Repeat | Interproscan |
| PF02969 all species → | TAF | TATA box binding protein associated factor (TAF) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011442 all species → | Domain | TAF6, C-terminal HEAT repeat domain | Interproscan |
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR046344 all species → | Homologous_superfamily | TAF6, C-terminal HEAT repeat domain superfamily | Interproscan |
| IPR037796 all species → | Family | Transcription initiation factor TFIID subunit 6 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR004823 all species → | Domain | TATA box binding protein associated factor (TAF), histone-like fold domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10221 all species → | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
| GO:0000124 all species → | Cellular Component | SAGA complex | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005669 all species → | Cellular Component | transcription factor TFIID complex | Interproscan |
| GO:0016251 all species → | Molecular Function | RNA polymerase II general transcription initiation factor activity | Interproscan |
| GO:0046695 all species → | Cellular Component | SLIK (SAGA-like) complex | Interproscan |
| GO:0051123 all species → | Biological Process | RNA polymerase II preinitiation complex assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03131 | TAF6; transcription initiation factor TFIID subunit 6 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
