Genomic Location: chr11:3726732...3751349
NR annotation: XP_047139354.1, fibrillin-2 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000015092 |
| Transcript |
| ENSQNNT00000015092 |
| Protein |
| ENSQNNP00000014564.1 |
| UniProt accession | Description |
|---|---|
| Q9TV36 | Fibrillin-1 OS=Sus scrofa OX=9823 GN=FBN1 PE=2 SV=1 |
| Q75N90 | Fibrillin-3 OS=Homo sapiens OX=9606 GN=FBN3 PE=1 SV=3 |
| P35556 | Fibrillin-2 OS=Homo sapiens OX=9606 GN=FBN2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003141 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12947 all species → | EGF_3 | EGF domain | Domain | Interproscan |
| PF12661 all species → | hEGF | Human growth factor-like EGF | Domain | Interproscan |
| PF12662 all species → | cEGF | Complement Clr-like EGF-like | Domain | Interproscan |
| PF00683 all species → | TB | TB domain | Family | Interproscan |
| PF00008 all species → | EGF | EGF-like domain | Domain | Interproscan |
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR036773 all species → | Homologous_superfamily | TGF-beta binding (TB) domain superfamily | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR017878 all species → | Domain | TB domain | Interproscan |
| IPR024731 all species → | Domain | EGF domain | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR013032 all species → | Conserved_site | EGF-like, conserved site | Interproscan |
| IPR050751 all species → | Family | Extracellular matrix structural protein | Interproscan |
| IPR026823 all species → | Domain | Complement Clr-like EGF domain | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24034 all species → | EGF-LIKE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
ENSQNNP00000014564.1.Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
