Gene detail

Detailed information of ENSQNNP00000015710.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047124039.1, transcription elongation factor SPT5 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000016257

gagtatgatgatgaagatgatgattatGAGGAATCTGGACCCAAACGAAAGAAGCGAAAACCAGCTCATGGAGGATTCATCATTGATGAAGCAGATGTGGATGACGATACGTACGAAGATGACGAAGTAGAAACGGAGCAGGGATTCACGGAACCAGGTAATATCACTTGTAACCATGGTGATCTTCTTAAAACCAAACTTTTCTCTAGGGATCACTATGACGATGACGAATACGAGACACCTGCAGAAATAGAACAACAAAGTCTATTGCCTGATGTCAAGGATCCTAACCTGTGGATGGTACGATGTCGAATGGGCGAGGAAAAGCAAGTGGTCTTTGCCTTGATGAGGAAATACATCACCTACCTGAATTCAGAAACACCTCTTCAAATTAAATCGGCCATCGCAGTTGAAGGGCTAAAGGGCTACATTTACGTGGAGGCGTACAAACAGACGCATGTCAAGGCAGCGATTGATGGTTTCGGGGCATTGCGAATGGGAATGTGGAAGCAACAGATGGTACCCATTAACGAGATGGTCGATGTCTTGAAGGTTGTGAAGGACATTGTCCAAATCAAAGCGAAATCGTGGGTTCGTATCAAAAGAGGAGTTTATAAAGATGACATTGCTCAGGTGATTCTGGAAATTCTAGTGATTCGATTACTGCGTCCACtgatttgtttcaaaattttttatggtatacaaaaatttAATGAGGGGGAAAAACGAAAGCGAAAAAGTCGACCGCCTCAACGAATGTTCGATAAAGAAGCAATTCAGAGTATTGGTGGAGATATCACACAAGACGGCGATTTCTGCACCTTTGAGAACAATCGTTATCGTGGCGGGTTCTTGTACAAAGTGATGACCATGTCTGCGGTGAACAGCGAGGGAATTAAACCTACACTCAGCGAGCTCGAAAGATTCGAAGCATCAATTGATGATGCAGAGTTGGAACTGGGCAACAGTAAAGCCTCGGAAGAGGTGTCGCACTCGTTTTCCCCTGGGGATGTAGTACGGGTGGCAGAGGGGGAGCTGATACATCTCACTGGCAAAGTGTTGAGTGTGAATGGTAACAAGGTGTTCATCATGCCAAAGCACGAGGTCCTGCAGGAGGCACTCGAGTTTCCAGCCAGTGAGTtggagaaatattttaaagttggTGACCACGTGAAAGTGATGAGAGGGAAGTTCGAGGGAGATACAGGTCTCATAGTTAGAGTGGAAGATAATGTCATCGTTCTCTTTTCCGATCTTACATTCCATGAGTTGAAAGTCAAACCTGAAGACGTTCAGTTGTGCAGTGAAATGAGCACGGGTGTTGACTCGCTTGGTCAACATCAATGGGGGGATTTGATATCTCTAGAtcCTCAGACAGTTGGTGTGATTGTACGATTGGAACGCGAGACCTTTTCCATTCTCAATCATCATGGAAAGGTTGTGCAAGTGAAACCTCAGGCAGTGACGAAGAAGAAAGATCGAAACTCAGTTGCGCTAGATTCTGAACAGAAACCCATCCAAATGAAGAACATTGTCAAAGTGTTGGATGGCCCTCACAAAGATTTGCAAGGTGAAATCAAACATTTGTATCGCGGCCACGCCTTCATACAGTCGAAGATGGTGCTGGAGAACGGGGGAATATTTGTTGTACGAAGCAAATCGTTGCTCCTAGCAGGGGGTGGAAAGAATGATGGGGGCAGTGTTTTACCAAGTATAGGTGGTGGTTTTGCACCCATGTCTCCCAGGATTACCAGTCCAGCTCGTGATGGACCAGgtggtggtggtggaggtGGGAGAGAAGGAGGGGGCGGGAGAGGAAGAGGGAGAGGTTTTGGTGGGGGTCGAGGTAGAGGCAGAGATAACTCATACATTGGTCAGACTGTCCGCATTCGCCAAGGCCCTTACAAAGGCTACATTGGGATCATTAAGGACGCCACAGAGTCATTAGCTCGAGTGGAGCTCCATACGAACTGCAAGACGATATCTGTGGATAGATCAAGACTAATTGGTATTGGTGGGCAGTCGAAAGTTGGCTCAAACACCACGTATTCGTGCACACCAATGCACGGAAGCCAAACACCTATGTATAGGAACCAGACCCCTCTGCATGACGGCAGTCGCACCCCGAACTATGGGGGCTCCCGCACCCCACTCCACGAGCCGTCTCGAACTCCATCGCATGAACAGGGCTCAAGAACACCCTCACATGCCGGTCACGGTGGGGCATGGGACCCCACCCTACCCAACACACCAGCGCGACCGAACGATGAGTTTGATAATTACAGTCTGGACGGAGCTGGACCATCTCCTGGGTTTGTTGTGACTCCGAGCCCTCAAACACCCTCTCATGGCGGATTTCACAGCTACACCCCTGAAACGCCCATGTCCAATGTGTTTGGTGGTGATTCTACCTACTCTCCGTTGCACACACCTTCTACGATGATAGGCAACCCACTCACCCCTGGAGCAGGATTGGGACCCATGTCTCCTGCTTATGCTCCGCAAACCCCCATGAGTCAGTACGAAGATGagCAAGACCAGACAGCAGATTTCTGCACTGATATTGTTGTTAAGATTTGTCACGATTATCACgaTAGTCGTTATGCTGACAAAAGAGCCGTCATTCGGGCCATCGATAAAGAAATCATGACTGTCGTTGTCATGGATACAAATGACAGTTTAAACATCTCATCATCTTCCGTGAAGTTAGTAACACCAGCCATTAGAGATCGGGTGAAGTTTTTGGCTGGTGATGACAAAGAGAACACTGGAAAGTTGATAAACATTGACGGACCTGATGGAATCATCTCGATGGATGGGGGAGAACAGAATCTGAAGATCATTCAGCTACACTTCCTAGCTGTTTACGAACcttaa

Transcript

ENSQNNT00000016257

Protein

Uniprot

Uniprot term	Description
Q5ZI08	Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
Q5R405	Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267	Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03439	Spt5-NGN	Early transcription elongation factor of RNA pol II, NGN section	Family	Interproscan
PF00467	KOW	KOW motif	Family	Interproscan
PF12815	CTD	Spt5 C-terminal nonapeptide repeat binding Spt4	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036735	Homologous_superfamily	NusG, N-terminal domain superfamily	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR024945	Domain	Spt5 C-terminal domain	Interproscan
IPR041975	Domain	Spt5, KOW domain repeat 2	Interproscan
IPR006645	Domain	NusG-like, N-terminal	Interproscan
IPR005100	Domain	NGN domain	Interproscan
IPR005824	Domain	KOW	Interproscan
IPR039385	Domain	NGN domain, eukaryotic	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR041976	Domain	Spt5, KOW domain repeat 3	Interproscan
IPR041977	Domain	Spt5, KOW domain repeat 4	Interproscan
IPR041978	Domain	Spt5, KOW domain repeat 5	Interproscan
IPR017071	Family	Transcription elongation factor Spt5, eukaryote	Interproscan
IPR039659	Family	Transcription elongation factor SPT5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006354	Biological Process	DNA-templated transcription elongation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0140673	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032784	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044	Cellular Component	DSIF complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15172	SUPT5H, SPT5; transcription elongation factor SPT5	-	Messenger RNA biogenesis	ko03019	deepkoala