Gene detail

Detailed information of ENSQNNP00000015828.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_047131110.1, peroxisome assembly factor 2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000016377

ATGGCAAATATAGCAGTGGCAAGAGTTCAGCGTGAGTTTAAAGAAGTAATTTGTAACGAGGaggtttctaaaaataatatcaaaCTTGAGCTGGCCTCTGAATCTAATTTCTCCAAGTTAAATGGGGAAATAGGTGGACCTCCTGATACACCATATGAAGGAGGCAAGTTTAAACTTGACATTGTGATTCCCGAAACCTACCCCTACAATCCACCGAAAATTAAGTTTGCCACCAAAATATGGCATCCAAACATTAGCTCTGTTACTGGGGCTATTTGCTTAGATATCTTGAAAGATCAATGGGCAGCAGCTATGACTTTGAGAACAGTTTTGTTATCGATTCAAGCACTGCTAGCTTCACCTGAACCTGATGATCCTCAAGATGCCGTAGTTGCTCAACAATACAAGGAACAACCTGATGCCTTCCTCAAAACTGCTCGGCATTGGACATTGCATTATGCTGATGGTAAATCGTCTCAGGATGAAGATTGTGAACAAAAAATGAGGAAGCTAATGGACATGGGTTTCGATGTTGAAAGTAGTAGAACTGCACTGTCTTCCAATGCATGGTGTGTTGAACGCTTTGAAAATACCAAAAATGATGTCATTGTGAGACTTAATTTGCATCCAAAATCTTATCCTGTTGCAGATGAAATGTCGGATAAAATTGCTGATAATGTTATTTATGTATCCCCTGCAACTCTCTTTAACTTCAGCAAACAAATCGCTGAAGAATATCGTCATTATAGCCAAAATGGCGTGGAAGTTAAAATTTTGGTTTTGGAGTCTTTTTCCCCAGAAGAGGGATTGTTATCCAACGAATTCTCTGTATCACCTATTGCATGTCCTTTTGGTGTTATTAGTGTATCATCTGTTGATTCGATATTAAAAGAGTATTTTGAAAAGTCAAGAGTTATTGTCCAGAATGAACTATTTGCTGTACAGACTCCATCTGCAGATATTCTTGCTCCTATTTATCTATGGTTTAAAGTTAAATCAGTAACACCTTGCATTAACCCATCTGTCCATACAAATGCTGTGTTTGTCAATTCAACTTATAGCAAGTTAATGGAAGAAGATGCAATTGCTTCTTCAGTCCCgtcatgttgttgttgtcgtcGAAACAATGCAAGCAAGTTCATTTTATACAGAAATCCTTTTTTCCAAGAAGCTTTTAAAAAGGAGATGCACGAAATTAGTCAGGCGATGATGCTGTTGTTAGGTGCAAAGAAAGTTGAAAGTTCAAATGTGAATGTTTTATTTGAAGGTCCCCGTGGAGCAGGAAAAGGTATGCTTGTAAGAACATTATGTGAGAAATTCTGTTTACATTATTACGAAGAAAACTGTTTTGATCTGATTGGTGAATCATTAGCTGCCTCAGAAAAGAGAATagataaaacatttcaattggCAGCTCATAGCGAACCATGTGTTTTGTACTTAAAGAATGTTCATTTAATTGGCAAGGATAAGGAAGGTATACACCAAGAGAGGCGGTTGTTGCATTGCATTGATGAGAATATTAAAGTTATCCGACGTAAATGTGTTTTGGTGATTGGAAGCACTTATGCTAGTAAAGATATTACTACAAGGTTATTCTCTCAATTTGTCTATCATGTTTCCGCGCGTGTACCAACGGAAGCCAATCGtttgtgtattttaaaaatgctcACTGGTTGTATTTCTTGGAAGGAGAAATTGCTGGAAGACATTGCCAGAAAGACGGCTGGTTTTGTTCTTAGTGATTTGATTGGATTAGTACGAGATTTGAAGGTGGAAGGACACATTGTAAACGAGTCATCTTTGAGTTCTGTGTTAGAATCGCTGCGGAAATTAAAGTCTGAATCATCAAATATTGTCAACATTCCCAAAGTTACTTGGGAAGACGTGGGCGGACTTAAGCATGCTAAGAAGGATATCTTAGACACAATTGAATTACCTTTGCAGTTTCCGGACCTCTTTGCATCGGGTATCAAACGATCAGGACTTCTATTTTATGGACCACCGGGTTGCGGGAAAACCTTGTTAGCCAAAGCGATTGCCACAGAATTCACTTTGAACTTTTACAGTGTGAAAGGACCTGAGCTGATTAACATGTATGTGGGTCAAAGCGAAGAAAATGTTCGAGACGTATTTGAAAAAGCTCGCAGCATGTCGCCTTGCGTTGTGTTTTTTGACGAGTTGGACTCACTGGCGCCAAATAGAGGGCGCAGCGGTGACTCTGGTGGGGTCATGGATAGAGTCGTATCTCAACTACTCGCAGAATTAGACGGTATGCAATCGaatactgatgtttttataGTGGCAGCCACTAACCGGCCAGACTTGATAGATCCCGCTCTTTTGCGACCTGGTCGTCTCGATAAATTGATATACGTGGGAGTGCCTGACACAGAAGAGGATAAATTGCGCGTATTAAATGCAGTCACTCGCAGGTTGAATCTTTCCGGTGACATCAATCTGAAGGAGTTGATTGGTTTGTGCCCGGACAACTTAACTGGTGCAGATTTTTACTCCTTAGCGGCCGAATCTCAAATGAACTGCTACCGAAGGTTGATCGAGGCGCATAAAAACAACGGAGACGTGTTAAATCCCGCGAAAGCTATTGTCATTAAAGAAGATATTGATTTAGcccttcaaaatatttcacctTCTATTTCCGTTCAAGAGCTTGAGCGATACAggaatttacaaaagcaaatcgATGTGGAAACTTGA

Transcript

ENSQNNT00000016377

Protein

Uniprot

Gene family

Uniprot term	Description
Q99LC9	Peroxisomal ATPase PEX6 OS=Mus musculus OX=10090 GN=Pex6 PE=1 SV=1
A0A061IR73	Peroxisomal ATPase PEX6 OS=Cricetulus griseus OX=10029 GN=PEX6 PE=3 SV=1
P54777	Peroxisomal ATPase PEX6 OS=Rattus norvegicus OX=10116 GN=Pex6 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR047533	Domain	Peroxisomal biogenesis factor 6, second ATPase domain	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016558	Biological Process	protein import into peroxisome matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13339	PEX6, PXAAA1; peroxin-6	-	Membrane trafficking	ko04131	deepkoala