Gene detail

Detailed information of ENSQNNP00000018048.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_002155743.1, katanin p60 ATPase-containing subunit A-like 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000018698

tacaagaagaaaaaatgcgGCAAGTCTCTATGAACAAACTGCGCATGTCATGGTGGCAAAGGTCATGAacacaatttgaaaaattatttgggGCACTGAACATAcaGCTCGCCAGGAGATTGCACAGGAGTATGAGTATGTGAAGGATATCAATCGCACACTAGCTGACTTCAAACGTGATACTTTCAATACGGCGGCACCACCTATGAAGCTTAGGGATTATCAATCAGAGATCCCGACAAGAGAGAGTCGAGATCCGGATGTCTGGGCGCCTCCTACTCCTATGGATCAAGAGCGAAGGGCATCAAAACCTGTGACCCGCCCTGTCGTGAGGAACATACGCAACGAAAGGAACGATGACCGATCAACCCGGCCTACCAAAAACAAACCAGCCCCTAAACGAACAAACAATCGAGCGCCAGAAAAAGCTCCAGCCAAGTCCAAAGTTGATTCGCGAAGGAATAAAGACGATAAACCTGTCAATGAGGGCGACACAGAACCTCGTTTCGATGGTTCCGGTTACGATAAAGATCTGGTTGAAGGTTTAGAGCGAGATATCGTGCAGAAAAATCCAAATGTGCGATGGAGCGACATTGCAGAGTTAAATGAAGCCAAGAAGTTATTAAACGAGGCTGTTGTTTTGCCGTTATGGATGCCGGACTTTTTCAAAGGAATAAGAAGGCCGTGGAAGGGCGTGCTCATGGTTGGGCCACCGGGTACAGGGAAAACAATGTTAGCGAAAGCGGTGGCAACTGAGTGTGGCACCACCTTCTTTAATGTCACCTCGTCCACCCTTACATCAAAATATCGTGGAGAATCGGAGAAGCTTGTTCGACTGCTCTTTGAAATGGCCCGGTTTTACGCTCCGAGTACGATCTTCATCGACGAGATCGATTCACTGTGTAGTAAACGAGGTAGTTCTAGTGAGCACGAAGCGAGTAGGCGAGTCAAGTCAGAGTTACTCATTCAAATGGATGGTGTTTCTGGTAACACGGCCGAGACGGACGCCACTAAAGTTGTCATGGTGCTCGCCGCAACCAATTTCCCGTGGGATATCGACGAGGCATTGAGAAGGCGATTGGAGAAACGAATATACATTCCATTGCCTTCAGCTAAAGGTCGAGAGGAATTGCTGAAAATCAATTTAAGAGAGGTCAAGTGTTCAGATGGCGTCGATTTGGTTAGTCTAGCAACAAACATGGACGGCTATAGCGGTTCCGACATCACGAACGTTTGCAGAGACGCCTCCATGATGGTCATGCGCAGAAAGATCATGGGGTTGTCGGCAGAAGAGATTCGAAACATTGCGAAGGAAGAGCTAGATTTGCCCGTCACTCAAGAAGATTTCACGGAGGCGCTGAAGAAATGCTCCAAGTCGGTTTCCGAAGCCGACATTAAAAAATACGTCGATTGGATGGAAGAGTTTGGTAGTGTATAGTGTACGCGTGGCGGGAATTCGAGAACCGACTATTTATTTTCACTCgagaatttattaaaataatttgttctgTGTAATATAGCAATAGATTGGAATTGTCAAACTTGTCATTCTGAAGCATACTGTGAAAGTAAATGAATCAACATTGGCTATTGCTTAAGATCATATAATAATCCTAAAGCTGAAAACAATACAATAGAAGCAAGGCTCGCGCAGCGTAATTCTGGGGTTATTGcatgatgaaaatgaaatattggAATGGTTTCTGCGTTCTAATTCTTCGACATCATACCGTTGCAAAAAGTACGTACCGTTTATCTAACACCCTATGAAAAATGTTAATTTCTACGAAGGGAGGTATTATGGGGCGTTAAAGCTGAAAGTTTACGCCATTGAATTTATTTAATCTAATTAAACGAAACAAGTGGCGcatttttttatctaaacaATTTACTAGGTTAGATTCATAAATAGTGAATTCCAACATGTTGAAACACGGGGGTATGTGGTTCTCTTTATAGTATGAACttaaaataactttattaCTATTGAAAATAAGTTTCTCCAATTTTTCCGGCGTGTTCAAACAAAAATCATGCAcggttttcttttatttttattttcgcaataACGGACACcggatttttaaatttcactgGGAACTCCTTTTTTACTAACCGtgggatatatatatatatatattatggaaatataaatatattaaattaattGTGCATAATCGAACAAATATCGTTTTATTTTAACTATCTTTCTTGGCGACGGCAAAGACCAATATTATTT

Protein

Uniprot

Uniprot term	Description
Q0IIR9	Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis OX=8364 GN=katna1 PE=2 SV=1
Q5U3S1	Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio OX=7955 GN=katnal1 PE=2 SV=1
Q9PUL2	Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus laevis OX=8355 GN=katna1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048612	Domain	Katanin p60 ATPase-containing subunit A1, AAA domain	Interproscan
IPR028596	Family	Katanin p60 subunit A1	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0008568	Molecular Function	microtubule severing ATPase activity	Interproscan
GO:0051013	Biological Process	microtubule severing	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015630	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07767	KATNA1; katanin p60 ATPase-containing subunit A1	EC:5.6.1.1	Cytoskeleton proteins	ko04812	deepkoala