Gene detail

Detailed information of ENSQNNP00000018796.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_002168375.3, transcription initiation factor TFIID subunit 5 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000019469

agttatttctaagcacctttttcagccataacaaacggcctaCTTTATATAAGGCTGAGTCTTTAAGAAAATGGAGAGAGCTATATAAAGGTGCGAAGGAGGCCAATGAACGTTGGATTATGATAAGTGTTGGTggagaaaaattattttgttgttgttagttTGTTGCGGATTTTTTATGTTGGGAATTGAGATAATTCTAACAAATTTATTGGCTACATCCTGGCAAAACAGCAGAACTTAGCTGGCTATCTATTTGTAGTTGGAGATGGTTGTGgagacaaaataaaaatgaaataatgaataaatttCCTCCAACAAGTAAGAAGCAGCATATTGAAGAGGTGAATCAGTTGGTTTCGTTATATCAAGAACAACGTTCATTGTATTATAAACAAGAGGAATCTGTCacaaattcagtcaacttgaAAACACTTAATTCATATAACTTCAGTCCATGGGATTATAACTTAGCAGATTCAAATATAGTtgtaaaaacagaaaaaaacttggaaaaaatggaaattGATATACGTACAAGCTCCCATTCCTTTGCTAAAAGGCAATTTGCTGAATGGTCAAATATGAAAAGTAACTTCACCggagaaaaaaattctgttTTATATGCACCTATGAAAACAGAACCTTGTTCATATGAAGAAAATTACTtgagtttgaaaatattcttaGCTGGGTGCAATGCAACTTATAAACGAGAACTTTCTGGTTTATTATGTCCAGTGTTTGTTCATTTCTATTTGGATTTAATAACTGGGGTAGACTTTTCGGCAGCACAAGCATTCTTCAACAAATTCAATCATGATCAtgaagaaaattataaaaatctgaTTGAATTGCTTCCAAAAGTATCCaccatttcacaattaaaacTTTACccaattttaaaagaatttaggGAAAACAAAGCAATTTTAGAACTTTCATCTGAtgtgtatttatattttttacaacatCTTCGCCATGGCAACTATCTGCTTATCCTGCAAACTCTGAATAGCCGCTTTGATGTAAAAACTTCAAATGATACTGTAACAAGTCGACTTCAGGATGACGAGGCAACACCGGACAACAATCGTGAGATGAATACATTTTCTTGGAGCCCAACCGAACAAGGATTATTAAAGAATCTTAGAGAATCTATAAACATTCTCGAAAACACTCACCAATCAGTACAGCCTTCAATATGTCTGTACTCACTAAGCAATAATTATAAAGGaATTACTTGCTGCTCATTTTCACAATACCAAACCTATTTAGCAGCTGGTTTTGCAGATTCTTCTGTTTGTTTCTGGAATCACAGTGCTCAATCTAACCTTGAAAATAACGCTGATGTGTACATCAATGATACTCACATTTTGCGTGGTCATAGTGGAgatgtttataaaatcaattttctcCCTTCTGATAGACATTTGTTGTCAGCTTCAAGAGATAAAACAGtACGTTTGTGGAGTTTGGAGAGTTGTAAGAGTTTGGTGGAGTACAAAGGCCACGATGCGAGTGTATGGGACATTTGTGTTTCCAATCATGGTTCATATTTTGTGTCTGCATCTATGGATACCACAGCTCGATTGTGGAACACTGAATATGTCTACCCATTGCGAGTATTCGCTGGTCATGTTGACAGTGTAGATTGCGTTTGTTTTCATCCAAACAGCAATTACGTCGCCACTGGCTCTACTGACAAATCGTGTCGACTCTGGGACCTTCAAAGTGGTCAGTTTGTGAGGGTTTTCTTAGGACATACGGCATCTATATGTTCATTGGCCTTCTCTTATGATGGCAAGTATCTCGTGTCAGCTGGCGTTGATTCAACGATCATGCTTTGGGACCTCTCCAACGGTCAACTTCTCACACAACTTAAATCTTCATCTACAAAACCCACCTATTGTTTGTCGTTTTCTTCTGACTCATCCACGCTTGCTTCAGGCGGTTTGGACCCTTACTTAAACTTTTGGGAAAGCGAgacgatttttaaaaaaggtcaGAGTAAAATTGAACCTGTCGTTCGTTATTCCACTCACAGAGATAGGACTATAGAGCTAAAATTTGCTTCTCGTGGGAACTTTCTCTACGCAGCAACTGTGACAGATGATAGGTAATAGTACTCTCTTAAAACACAGTAAAACATAGTATACAAACACAGTATGTTAGTATAATCGGATAGTAGGAATTATTTTCTATTGCTGTCATTGTAAAAAAggtatatgtatatttatattggCATTTTTTCGCGTGGTTAATCACAATTCTTTCTCTGTATGTTGCAAAGAAATAAGTAACACTTTATGCTCCTgcttaattaaattattttttgaggaTTATTACCATCTGATGAATTattctatttattttattctatgGTTTGAGAACAGCATGCGATATGAAAAGTAAAGTAAATATTACTTCATTACCGCATGTTGATGCATTTCAATGATGTCAAGGattatttcaaacattgtAACAATAATTCTACGGGGACCATGGGCGTAGGAGCCAAATATTGTTTGTGtgggcacaaccacctctgccCGAAAGATTTTTCGGCCGGTTGTAGGATcgttaaatcaagtatatgtgACAGCGTCCGCAGCGGCCTGATACCTCCTCTGCTTCTGATTTATCTTCTTCCATGCTTCTATATACCGGTgctttatttacattttcattcttcGTGTCTAATACAATAACCTTGGGTGCCAAATCGACAGTCAAGCTTGCAGAACTGGTGTTGGTTGGATCATTTGCAGCAGACGGAGTTCTACTTCTAGAAGTTGGCAACCCTCTGTTGAAGAGGATCTTCTTCCTcgattgaaacaaatttaactgataaactgtttttgtgctttcgtttaagatgTTCTGACTTATTATCAGAATATAGAACTGccgaactaaacagactagagcgtaatgacatgagaatgattagatggatgtcaaatgtgatattgaaggataggaagcctccaaatgagttaagagaacgctgtggactcgaaagtgtaagaaaatctttgcaaaggcgtcggctttggtttggtcatgttgagagaatgaatgataataactgggttaagaagtgtagagatttagttgtt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001573 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04494 all species →	TFIID_NTD2	WD40 associated region in TFIID subunit, NTD2 domain	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR037264 all species →	Homologous_superfamily	TFIID subunit TAF5, NTD2 domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007582 all species →	Domain	TFIID subunit TAF5, NTD2 domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03130	TAF5; transcription initiation factor TFIID subunit 5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.