Gene detail

Detailed information of ENSQNNP00000019059.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_012554099.2, DNA repair endonuclease XPF-like isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQNNT00000019740

ATGAACAATCTTTTATCTTATGAGTCAAGTGTTTTTTTGGACCTTATGGAAGATGATTGTCTTTTAATATGTGCCAAAGGACTAGGTCTTGATCGAATTTTGCTTAAAACGATTGAAGCATTTTGTCAACCGGAAAACTTagtgttgtttttaaacacCATACCTGAAGAGCAACAGTACTTTGTAGATGAGCTTACGGCAAAGGGAGTAACTTTGTTGCCTCGTGTCATAACAGCTGATGTATCCACAAGTGATAgagaaaaactttatttacaaGGTGGTGTATTTTTTATCACATCTAGAATTCTCGTAGTGGACATGTTAATAAAGCGTTTACCGATTGAGTATGTGAGTGGAATTGTTGTTCAACGAGCCCATAAAGTTGGTCAATCATCTCAAGAGGGTTTCATACTGCGTATGTATCGAGAAGCCAACAGCGATGGATTTATTAAGGGTTTCTCGGATTCACCTACTTCATTTATGATTGGGTTCAGTCATGTTGAACGTGTTATGAAACAactgtttgtaaaaaaactatttttaaggCCGCGTTTCCATGCCGACATTGTTGCATGTTTAGAGAAGCACAAACCAAAAGTTATTGAACTCAGTGTGAGTTTAACACCGTTAATGACAAGAATACAGCTTTCCATAATGGATATGATTGAAGTTTGCATCCGTGAATTGAAAAAATCTGCTCCAATGTTGGATACGGAAGAAATAACACTAGAAAATAGTTTGCTGAATACCTTTGACAAGATTTTAAAACTGCAATTAGATCCGCAGTGGAATCAGATCAATTCTAAAACTAAGCAATTGGTATCTGATTTGAAGGTTCTCCGTACACTGTTAACGTATTTAACTCAGTATGATTGTATaactttttacaattttttacaaTCCCTGCACTCAAACAATGTTAGCCAAGATTCATTTTGGATGTTTTTAGATGCTGCTAATTCTGTTTTTGTCAATGCAAAAGCAAGAGTATTTGGtgttgaaaaatgtaaaaagtcGGGTAACAAGTCTAGTAATGAAATATTTGAATCAAGTCCAAAATGGGATGCACTGATGGAAGTTCTAAGAGATATTGAAGCTGAAAAAAAGGAAGATTCCGCCAATAATATTCTGATTTGTGCTTCAGATGAAAGGACCTGTCATCAACTTCGAAACGTAATGTGCTCCGGGGTGCAATCAGTTTTGAAGAAGCTCTTTGAAAATAGCTCTTTGAATAAAGAAGATAAAACTGCCTTTACCAATAGTAAGAAGAGTAAAAGGACAAAACtagacaatgaattaactaaAGACATAAAATTAgactttttaaataattttgaaataagCCAAGATTTCCAGGTTGATATCTTGCCAGAATGCTCTGTTGTGCTTCATCCCTTATCTGGAAATACCAATCCTTATGGATTACTACGCAAATTGTTTGATCTAAAGCCAAGATTTGTCATACTTTATGATGCTCAGATGCAATTTGTGCGCCAACTGGAAGTATTTAAAGCCTCGCACCCAACATTATCTCTTGAAGTTTATTTTCTAGTTTATAATGGCTCTGTAGAGGAACAAAGGTATCTTACTACTCTCAGAAAAGAAAAGGATGCTTTTGAGTTGTTGATTCAACAAAAGGCTGATATGATTATACCAGAAGAACGTCAGGCTAAAACAGAAACTGCAAAATTGTCTTTACGTGGTACTCCTAACATAGAAGGACCGGCCAATACTAGAAAGTTGGGTGGAAGAAAGGTACAAAATACTAAAAGCAAAAAGATAGTGGTGGACATGCGAGAGTTTCGCAGCGAATTACCATCACTTATTCACAAACGCGGAATCGATATTGAGCCAGTCACACTAGAAGTTGGTGATTATATACTAAGCCCTGATATGTGTGTGGAGCGCAAAAGTGTTTCCGACCTCGTAGGATCTCTTAATAACGGCCGTTTGTATATACAGTGTGTTGCCATGACAAGGTTTTACAAGCGTGCTATTTTACTTATTGAATTCGATGAAAGTAAATCGTTTTCTCTACAGAATAAAAAATCTCTCAGTAATGAAGTCAGTCTGCAAAATATTTCCTCGAAGCTCACTCTTCTGACAGTTCACTTTCCGAAGTTGCGAATCATATGGTCTGAAAGTCCGCACCTGACGGCTGAGATATTCGAAGATCTGAAAACGAATTGTGAAGAACCTAATGGGCATGTGGCCATGGCTGTAAATGTCGAAGAAGGGGAAGCCGTAAACGAACTATTGCACAACATGATGCCGGTGGACATGTTGCAGAAGTTCCCAGGTATCAACTCCAAGAATTATCGTTTGTTACTTAATAAGTACAAAGACGTGCACGAGTTGGTTAATGACTGCAACGAGACGCTTGGTGAGAGACTTAAAAATCCATCAAATGCTTCAAAATTCTATGACTTTGTGAGTAAGGAGCATGATTTCACACAGACTcacataaaacaaaagaaataa

Transcript

ENSQNNT00000019740

CAGAATAGCGCCTCAGAGTTGcttgtatatataatttgtgattgaataatttgatttaaaaaataatatggtcatttattgttttagaaaGACCCTGTGATATAGATCAAAATACACATTCATCCATTAATTTGAGTAATAAGTGACTCTAAAGGCACAGTTTATATCTATCTGCACaacttaaaatttgaatttttacttatttagatttttcactatattatatatatatatatatatgtatatatttaggTACTATAATATATCTATAGATATATAgccaaaaataattttgcactATGAACAATCTTTTATCTTATGAGTCAAGTGTTTTTTTGGACCTTATGGAAGATGATTGTCTTTTAATATGTGCCAAAGGACTAGGTCTTGATCGAATTTTGCTTAAAACGATTGAAGCATTTTGTCAACCGGAAAACTTagtgttgtttttaaacacCATACCTGAAGAGCAACAGTACTTTGTAGATGAGCTTACGGCAAAGGGAGTAACTTTGTTGCCTCGTGTCATAACAGCTGATGTATCCACAAGTGATAgagaaaaactttatttacaaGGTGGTGTATTTTTTATCACATCTAGAATTCTCGTAGTGGACATGTTAATAAAGCGTTTACCGATTGAGTATGTGAGTGGAATTGTTGTTCAACGAGCCCATAAAGTTGGTCAATCATCTCAAGAGGGTTTCATACTGCGTATGTATCGAGAAGCCAACAGCGATGGATTTATTAAGGGTTTCTCGGATTCACCTACTTCATTTATGATTGGGTTCAGTCATGTTGAACGTGTTATGAAACAactgtttgtaaaaaaactatttttaaggCCGCGTTTCCATGCCGACATTGTTGCATGTTTAGAGAAGCACAAACCAAAAGTTATTGAACTCAGTGTGAGTTTAACACCGTTAATGACAAGAATACAGCTTTCCATAATGGATATGATTGAAGTTTGCATCCGTGAATTGAAAAAATCTGCTCCAATGTTGGATACGGAAGAAATAACACTAGAAAATAGTTTGCTGAATACCTTTGACAAGATTTTAAAACTGCAATTAGATCCGCAGTGGAATCAGATCAATTCTAAAACTAAGCAATTGGTATCTGATTTGAAGGTTCTCCGTACACTGTTAACGTATTTAACTCAGTATGATTGTATaactttttacaattttttacaaTCCCTGCACTCAAACAATGTTAGCCAAGATTCATTTTGGATGTTTTTAGATGCTGCTAATTCTGTTTTTGTCAATGCAAAAGCAAGAGTATTTGGtgttgaaaaatgtaaaaagtcGGGTAACAAGTCTAGTAATGAAATATTTGAATCAAGTCCAAAATGGGATGCACTGATGGAAGTTCTAAGAGATATTGAAGCTGAAAAAAAGGAAGATTCCGCCAATAATATTCTGATTTGTGCTTCAGATGAAAGGACCTGTCATCAACTTCGAAACGTAATGTGCTCCGGGGTGCAATCAGTTTTGAAGAAGCTCTTTGAAAATAGCTCTTTGAATAAAGAAGATAAAACTGCCTTTACCAATAGTAAGAAGAGTAAAAGGACAAAACtagacaatgaattaactaaAGACATAAAATTAgactttttaaataattttgaaataagCCAAGATTTCCAGGTTGATATCTTGCCAGAATGCTCTGTTGTGCTTCATCCCTTATCTGGAAATACCAATCCTTATGGATTACTACGCAAATTGTTTGATCTAAAGCCAAGATTTGTCATACTTTATGATGCTCAGATGCAATTTGTGCGCCAACTGGAAGTATTTAAAGCCTCGCACCCAACATTATCTCTTGAAGTTTATTTTCTAGTTTATAATGGCTCTGTAGAGGAACAAAGGTATCTTACTACTCTCAGAAAAGAAAAGGATGCTTTTGAGTTGTTGATTCAACAAAAGGCTGATATGATTATACCAGAAGAACGTCAGGCTAAAACAGAAACTGCAAAATTGTCTTTACGTGGTACTCCTAACATAGAAGGACCGGCCAATACTAGAAAGTTGGGTGGAAGAAAGGTACAAAATACTAAAAGCAAAAAGATAGTGGTGGACATGCGAGAGTTTCGCAGCGAATTACCATCACTTATTCACAAACGCGGAATCGATATTGAGCCAGTCACACTAGAAGTTGGTGATTATATACTAAGCCCTGATATGTGTGTGGAGCGCAAAAGTGTTTCCGACCTCGTAGGATCTCTTAATAACGGCCGTTTGTATATACAGTGTGTTGCCATGACAAGGTTTTACAAGCGTGCTATTTTACTTATTGAATTCGATGAAAGTAAATCGTTTTCTCTACAGAATAAAAAATCTCTCAGTAATGAAGTCAGTCTGCAAAATATTTCCTCGAAGCTCACTCTTCTGACAGTTCACTTTCCGAAGTTGCGAATCATATGGTCTGAAAGTCCGCACCTGACGGCTGAGATATTCGAAGATCTGAAAACGAATTGTGAAGAACCTAATGGGCATGTGGCCATGGCTGTAAATGTCGAAGAAGGGGAAGCCGTAAACGAACTATTGCACAACATGATGCCGGTGGACATGTTGCAGAAGTTCCCAGGTATCAACTCCAAGAATTATCGTTTGTTACTTAATAAGTACAAAGACGTGCACGAGTTGGTTAATGACTGCAACGAGACGCTTGGTGAGAGACTTAAAAATCCATCAAATGCTTCAAAATTCTATGACTTTGTGAGTAAGGAGCATGATTTCACACAGACTcacataaaacaaaagaaataatttttatgcttttacaTCCAATAACAAGATACTttgaaggttctttgagtatATATTCAAACACGAAATCtttcaaagtttgtgtttGTCGGCTTTGctctattttttatatttactaaatattaaaaaacataaactttgtttctttgtcaTATTTCGTTAGTTATTGTATAACACAATTGTTTAAGATAACAAGTTTCACTTTCT

Protein

Uniprot

Uniprot term	Description
Q92889	DNA repair endonuclease XPF OS=Homo sapiens OX=9606 GN=ERCC4 PE=1 SV=3
Q9QYM7	DNA repair endonuclease XPF OS=Cricetulus griseus OX=10029 GN=ERCC4 PE=2 SV=3
Q9QZD4	DNA repair endonuclease XPF OS=Mus musculus OX=10090 GN=Ercc4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047520	Domain	DNA repair endonuclease XPF, nuclease domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006166	Domain	ERCC4 domain	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10150	DNA REPAIR ENDONUCLEASE XPF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000014	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000110	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006296	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:1901255	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10848	ERCC4, XPF; DNA excision repair protein ERCC-4	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala